View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5661_high_4 (Length: 410)
Name: NF5661_high_4
Description: NF5661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5661_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 3045031 - 3044640
Alignment:
| Q |
12 |
cgcttcatagatggtgatgt-tcatttattttatcccttttttcgttcatattttaacatgaggatg-atgttcttggtttaatgttgcagttagttact |
109 |
Q |
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| T |
3045031 |
cgcttcatagattgcgatgtctcatttattttatcccttttttggttcatattttaacatgaggaagtatgtttttggtttaattttgcagttagttact |
3044932 |
T |
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| Q |
110 |
cctcattcttgtgttggagaaagagttcttaacatcatcattgtgtgaactgattgaagcaaagatgggttttgaaccattgatttggtactgcaagcca |
209 |
Q |
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| T |
3044931 |
cttcattcttgtgttggagaaagagtttttaacatcat---tgtgttaaccgattgaagcaaagatgggttttgaaccattggtttggtactgcaagcca |
3044835 |
T |
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| Q |
210 |
gaaccaaacagtaattgggaaaaaatagtagatagtgcttttgggtcatatacgccatgtgcaatcaatactcttgttatctcaacctcaaatttggttc |
309 |
Q |
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| T |
3044834 |
gaaccaaacagtatttggtctaaaacagtagatagtgcttttgggtcatatacaccatgtgcaattaacactcttgttatctcaacctcaaatttggttc |
3044735 |
T |
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| Q |
310 |
ttatggggttgtgtttatatagaatatggcttattattttcaatgccaaagctcaaaggttttgtttcaaatcaaattactataattatattctt |
404 |
Q |
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| T |
3044734 |
ttatggggctgtgtttatatagaatatggcttattattttcaatgccaaagctcaaaggttttgtttgaaaacaaattactatagttatattctt |
3044640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 58 - 404
Target Start/End: Complemental strand, 3016566 - 3016222
Alignment:
| Q |
58 |
catattttaacatgaggatgatgttcttggtttaatgttgcagttagttactcctcattcttgtgttggagaaagagttct-----taacatcatcattg |
152 |
Q |
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| T |
3016566 |
catattttaacatgaggatg---tttatggtttcatgttgcagttatt----cttcattcttgtgttggaaaaaaagctctgaagttaacagcatcgtcg |
3016474 |
T |
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| Q |
153 |
tgtgaactgattgaagcaaagatgggttttgaaccattgatttggtactgcaagccagaaccaaacagtaattgggaaaaaatagtagatagtgcttttg |
252 |
Q |
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| T |
3016473 |
tgtgaactgattgaagcaaagatgggttttgaaccattgatttggtattgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgcttttg |
3016374 |
T |
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| Q |
253 |
ggtcatatacgccatgtgcaatcaatactcttgttatctcaacctcaaatttggttcttatggggttgtgtttatatagaatatggcttattattttcaa |
352 |
Q |
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| T |
3016373 |
ggtcatatacaccatgtgcaatcaatactcttgttatctcaacctcaaatttggttcttatggggttgtgtttatatagaatatggcttattattttcaa |
3016274 |
T |
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| Q |
353 |
tgccaaagctcaaaggttttgtttcaaatcaaattactataattatattctt |
404 |
Q |
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| T |
3016273 |
tgccaaagctcaaaggttttgtttgaaatcaaattactataattatattctt |
3016222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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