View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5661_low_1 (Length: 947)
Name: NF5661_low_1
Description: NF5661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5661_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 904; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 904; E-Value: 0
Query Start/End: Original strand, 12 - 931
Target Start/End: Complemental strand, 42453467 - 42452548
Alignment:
| Q |
12 |
tcatcaaaataagtgtaaataccaaccaagcaatttagaaagacgttgatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453467 |
tcatcaaaataagtgtaaataccaaccaagcaatttagaaagacgttaatcctctcaaaatcagctttacatcttctcatactccacacgatttcacgtg |
42453368 |
T |
|
| Q |
112 |
aatctagcatataatcaacaacctcatttctcaacggcggttcagctttgctcatatttgaccgcacaagctcgatagtttgttgccttaatccgtataa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453367 |
aatctagcatataatcaacaacctcatttctcaacggcggttcagctttgctcatatttgaccgcacaagctcgatagtttgttgccttaatccgtataa |
42453268 |
T |
|
| Q |
212 |
ctgagcttgagacagcggatcctcgaaatgttgtggaaaaagcattggcactgtgtactttttgtacaaattagctttagaagggctagtaaacttgaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453267 |
ctgagcttgagacagcggatcctcgaaatgttgtggaaaaagcattggcattgtgtactttttatacaaattagctttagaagggctagtaaacttgaaa |
42453168 |
T |
|
| Q |
312 |
gacaattgaatttcccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453167 |
gacaattgaatttcccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagac |
42453068 |
T |
|
| Q |
412 |
tgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtaga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453067 |
tgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtaga |
42452968 |
T |
|
| Q |
512 |
tggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctaca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452967 |
tggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctaca |
42452868 |
T |
|
| Q |
612 |
caataggcatcggtgcgaccttgaggtttcatctctggaagacctgtagcattcaatatccccatctcaaaaactccaatgtttggtctccagaccccat |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452867 |
caataggcatcggtgcgaccttgaggtttcatctctggaagacctgtagcattcaatatccccatctcaaaaactccaatgtttggtctccagaccccat |
42452768 |
T |
|
| Q |
712 |
tgtctgttggattcacatcagtgctgtaccgtggatcgtcatcaaacatatgatacccaccgtccaaagtgaccctcatactaagcttaccgacaaaaaa |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452767 |
tgtctgttggattcacatcagtgctgtaccgtggatcgtcatcaaacatatgatacccgccgtccaaagtgaccctcatactaagcttaccgacaaaaaa |
42452668 |
T |
|
| Q |
812 |
tctttcattctgtataacatccatggttacaagacgatccggattttgtaatggtgtttgtgccttcttcacaggaaatacacatgtccctaacctcttg |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452667 |
tctttcattctgtataacatccatggttacaagacgatccggattttgtaatggtgtttgtgccttcttcacaggaaatacacatgtccctaacctcttg |
42452568 |
T |
|
| Q |
912 |
caccttgccaatgttccttg |
931 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42452567 |
caccttgccaatgttccttg |
42452548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 625
Target Start/End: Original strand, 27253643 - 27253755
Alignment:
| Q |
513 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
612 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||| |||| |||||||||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
|
|
| T |
27253643 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
27253742 |
T |
|
| Q |
613 |
aataggcatcggt |
625 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
27253743 |
aatatgcgtcggt |
27253755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 513 - 625
Target Start/End: Original strand, 21197801 - 21197913
Alignment:
| Q |
513 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
612 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||| |||| |||||| ||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
|
|
| T |
21197801 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagaatatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
21197900 |
T |
|
| Q |
613 |
aataggcatcggt |
625 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
21197901 |
aatatgcgtcggt |
21197913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University