View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5661_low_5 (Length: 316)
Name: NF5661_low_5
Description: NF5661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5661_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 1470858 - 1470565
Alignment:
| Q |
15 |
actagtctatattttcgaagaagat---caagtggtcctgtaattctataaataagatatgtgtttacaattacaagaatggtactgtaaagattcctgg |
111 |
Q |
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| T |
1470858 |
actagtctatattttcgaagaagatgaccaagtggtcctggaattctataa-taagatatgtgtttacaattacaaggatggtactgtaaagattcctgg |
1470760 |
T |
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| Q |
112 |
gattcaaggcttattttctactatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcg |
211 |
Q |
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| T |
1470759 |
gattcaaggcttattttctacgatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcg |
1470660 |
T |
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| Q |
212 |
aag-----attctccgatcatgtgtcttttgttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaatta |
301 |
Q |
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| T |
1470659 |
aagattatattctccgatcatgtgtcttttgttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaatta |
1470565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 301
Target Start/End: Complemental strand, 1459460 - 1459198
Alignment:
| Q |
31 |
gaagaagatcaagtggtcctgtaattctataaataagatatgtgtttacaattacaagaatggtactgtaaagattcctgggattcaaggcttattttct |
130 |
Q |
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| T |
1459460 |
gaagatgaccaagtggtcctagatttctataa-taagatatatgtttacaattacaagaatcgtatttcaaagattcctgagattcatggttt------t |
1459368 |
T |
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| Q |
131 |
actatgttcagctccaatgtctacattgaaagtctcgtatcgccttgacctagatgctttgctatgctatgttggctctcgaagattctccgatcatgtg |
230 |
Q |
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| T |
1459367 |
actaggtttacttctaatgtctacgcagagagtctcatatcaccttgacctacattatttgctgtgctatgttggctctcgaagattctcctctcaagtg |
1459268 |
T |
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| Q |
231 |
tcttttgttatgtcatttattttatgttggttcta-atttctgatgttcactttatagttccatgttaatta |
301 |
Q |
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| T |
1459267 |
--ttttgttatgttgtttattttatgttggttctagttttttgatgttgactttctagttccatgttaatta |
1459198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 7564656 - 7564602
Alignment:
| Q |
64 |
taagatatgtgtttacaattacaagaatggtactgtaaagattcctgggattcaa |
118 |
Q |
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| T |
7564656 |
taagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaa |
7564602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 1453730 - 1453682
Alignment:
| Q |
73 |
tgtttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
121 |
Q |
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| T |
1453730 |
tgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggc |
1453682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 1465422 - 1465374
Alignment:
| Q |
73 |
tgtttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
121 |
Q |
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| T |
1465422 |
tgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggc |
1465374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 55419942 - 55419988
Alignment:
| Q |
75 |
tttacaattacaagaatggtactgtaaagattcctgggattcaaggc |
121 |
Q |
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| T |
55419942 |
tttacaattataagaatggtaatgtaaagattcctgacattcaaggc |
55419988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 55420123 - 55420182
Alignment:
| Q |
238 |
ttatgtcatttattttatgttggttctaatttctgatgttcactttatagttccatgttaa |
298 |
Q |
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| T |
55420123 |
ttatgtcatttattttatgctggttctagtttttg-tgctgcctttatagttccatgttaa |
55420182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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