View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5661_low_8 (Length: 261)
Name: NF5661_low_8
Description: NF5661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5661_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32153400 - 32153173
Alignment:
| Q |
1 |
gacctgttgcattagagtcttatgtcttgtgaattttgctattcaacgttgaatggataaaaagctcacagtacttaagccatgaaactcacgtaattaa |
100 |
Q |
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| T |
32153400 |
gacctgttgcattagagtctcatgtcttgtgaattttgctattcaacgttgaatggataaaaagctcacagtacttaagccatgaaactcacgtaattaa |
32153301 |
T |
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| Q |
101 |
ccaatctcttgggttgaactttcctcgtgagtttaagttatgacaaccggtcctttcatcaagagtttaactacaaatatagtttatctacaagtttaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
32153300 |
ccaatctcttgggttgaactttcctcgtgagtttaagttatgacaaccggtcctttcatcaagagtttaactacaaaaatag--------------taca |
32153215 |
T |
|
| Q |
201 |
acaggctaccacggaggataatttatttagatgaggcataat |
242 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
32153214 |
acaggctaccaccaaggataatttatttagatgaggcataat |
32153173 |
T |
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