View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5662_low_2 (Length: 264)
Name: NF5662_low_2
Description: NF5662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5662_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 53036731 - 53036971
Alignment:
| Q |
7 |
atggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccactagccggtcgtttacaatggaaa |
106 |
Q |
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| T |
53036731 |
atggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccactagccggtcgtttacaatggaaa |
53036830 |
T |
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| Q |
107 |
gaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcacctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036831 |
gaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcacctt |
53036930 |
T |
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| Q |
207 |
cttgtgaatattatccttaccttatcccgcacatcgattac |
247 |
Q |
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| T |
53036931 |
cttgtgaatattatccttaccttatcccgcacatcgattac |
53036971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 39996863 - 39996624
Alignment:
| Q |
8 |
tggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccactagccggtcgtttacaatggaaag |
107 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
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| T |
39996863 |
tggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccacttgccggtcgtttacactcgaaag |
39996764 |
T |
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| Q |
108 |
aaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttc |
207 |
Q |
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|| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
39996763 |
gaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatccgaactaggtgacttttcaccttc |
39996664 |
T |
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| Q |
208 |
ttgtgaatattatccttaccttatcccgcacatcgattac |
247 |
Q |
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| T |
39996663 |
ttcggaatattaccgttaccttatcccacacattgattac |
39996624 |
T |
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