View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5662_low_3 (Length: 238)
Name: NF5662_low_3
Description: NF5662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5662_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 53036908 - 53037128
Alignment:
| Q |
18 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
117 |
Q |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
53037007 |
T |
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| Q |
118 |
cagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggaccaagcgcattgcatttcacttctgagtggg |
217 |
Q |
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| T |
53037008 |
cagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggaccaagcgcattgcatttcacttctgagtggg |
53037107 |
T |
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| Q |
218 |
cacgacttgcgcgtggtgagc |
238 |
Q |
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| T |
53037108 |
cacgacttgcgcgtggcgagc |
53037128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 39996687 - 39996467
Alignment:
| Q |
18 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |||||| ||||||| || |
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| T |
39996687 |
cgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatcttt |
39996588 |
T |
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| Q |
118 |
cagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggaccaagcgcattgcatttcacttctgagtggg |
217 |
Q |
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| T |
39996587 |
caactcacaaattttaattgcggtgtagttagtattagtttgttaatctcacacgcagttgctgatggaccaagcgcgttgcatttcatttttgagtggg |
39996488 |
T |
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| Q |
218 |
cacgacttgcgcgtggtgagc |
238 |
Q |
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| T |
39996487 |
ctcggattgcacgtggtgagc |
39996467 |
T |
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