View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5663_low_1 (Length: 932)
Name: NF5663_low_1
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5663_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 808; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 1 - 915
Target Start/End: Complemental strand, 32896907 - 32895993
Alignment:
| Q |
1 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896907 |
cacagagctggattggcatgtaatgagagaaaagttgcaatttaagttcattgttttacttcttgtgcccagcaattcccaactagctaatgcattccct |
32896808 |
T |
|
| Q |
101 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896807 |
aagccactacattttcatgtttttatggtcttttttccaagttctcgctatgcttttatgatcttttccaactaaccgaaataaataacagaaaaattta |
32896708 |
T |
|
| Q |
201 |
taagttgataaatcatatatacaagtaataatagaacaaattaatgacaaaagtaaaaggttgacnnnnnnnnttgacaagttaaattaaatttaggcag |
300 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
32896707 |
taagttgatacatcatatattcaagtaataatagaacaaattaatgacaaaagtaaaaggttgacaaaaaaaattgacaagttaaactaaatttaggcag |
32896608 |
T |
|
| Q |
301 |
tgctttattagaattaatagactaagtttcaagatgagattcatgttcaaannnnnnnnnnnnncaagaaattcgtatcgattgagtttagtttaataac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32896607 |
tgctttattagaattaatagactaagtttcaagatgagattcatgttcaaaaaatatatatatacaagaaattcgtatcgattgagtttagtttaataac |
32896508 |
T |
|
| Q |
401 |
taatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctaga |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32896507 |
taatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctaga |
32896408 |
T |
|
| Q |
501 |
ctaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcatatcc |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32896407 |
ctaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcaaatcc |
32896308 |
T |
|
| Q |
601 |
tcaagttgtgcaaattttatcatatgcacaattggatgtacattgtacatctctgctaccttaccagctaaagatacttgctatattctgcattcttcta |
700 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
32896307 |
tcaagttgtgcaaattttatcatatgcacacttggatgtacattgtacatctctgctaccttaccagctaaggatgcttgctatattctgcattcttcta |
32896208 |
T |
|
| Q |
701 |
cgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgat |
800 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32896207 |
cgtctccgtctccactattgtactgccttttaactttggtcttgatatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccatgat |
32896108 |
T |
|
| Q |
801 |
gacaataaaaccacctatgatgctgaagatttgatgagaagcaagttacttttcgaagaaaaacgtgaccactaactacatattcatagttgtaattttt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32896107 |
gacaataaaaccacctatgatgctgaagatttgatgagaagcaagttacttttcgaagaaaaacgtgaccactaactacgtattcatagttgtaattttt |
32896008 |
T |
|
| Q |
901 |
agaagagcttaacat |
915 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32896007 |
agaagagcttaacat |
32895993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 736 - 837
Target Start/End: Complemental strand, 32919604 - 32919503
Alignment:
| Q |
736 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagatttgat |
835 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatgatgctgaaaatttaat |
32919505 |
T |
|
| Q |
836 |
ga |
837 |
Q |
| |
|
|| |
|
|
| T |
32919504 |
ga |
32919503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 679 - 829
Target Start/End: Complemental strand, 32885509 - 32885359
Alignment:
| Q |
679 |
tgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccaca |
778 |
Q |
| |
|
|||||||||| |||||||||| | |||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32885509 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
32885410 |
T |
|
| Q |
779 |
gtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaaga |
829 |
Q |
| |
|
| |||| ||| | ||||||||| |||||||| ||||||||||||| |||| |
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|
| T |
32885409 |
gcaacagatacaaacccatgatcacaataaatgcacctatgatgctaaaga |
32885359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 393 - 565
Target Start/End: Complemental strand, 32885751 - 32885583
Alignment:
| Q |
393 |
ttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacct-aggttgtataattc |
491 |
Q |
| |
|
|||||| | ||||||||| |||||| |||| || || |||||| |||||||||||| | ||||||||||||||||||| | ||||| || ||||| |
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| T |
32885751 |
ttaatatcaaatcgagattcgactactatgcatcgtaagatactaataaccatgtaagt-----gatttgtctaaatggccacattaggttataaaattc |
32885657 |
T |
|
| Q |
492 |
tggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaa |
565 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
32885656 |
tggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaa |
32885583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 729 - 837
Target Start/End: Original strand, 19503529 - 19503637
Alignment:
| Q |
729 |
tttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaag |
828 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| || |||||||| |
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|
| T |
19503529 |
tttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcaccgatcatgctgaaa |
19503628 |
T |
|
| Q |
829 |
atttgatga |
837 |
Q |
| |
|
|||| |||| |
|
|
| T |
19503629 |
attttatga |
19503637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 736 - 827
Target Start/End: Complemental strand, 32935838 - 32935747
Alignment:
| Q |
736 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaa |
827 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |
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|
| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatgaggctgaa |
32935747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 734 - 832
Target Start/End: Complemental strand, 32953234 - 32953136
Alignment:
| Q |
734 |
ctttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatgatgctgaagattt |
832 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||||| ||||||| |||||||| |||| |
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|
| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctataatgctgaaaattt |
32953136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 845 - 913
Target Start/End: Complemental strand, 32919463 - 32919395
Alignment:
| Q |
845 |
gttacttttcgaagaaaaacgtgaccactaactacatattcatagttgtaatttttagaagagcttaac |
913 |
Q |
| |
|
|||| ||||| |||||||||||| | ||| ||||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
32919463 |
gttatttttctaagaaaaacgtgtctactgactacgtattcatagttgtaacatttagaagagtttaac |
32919395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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