View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5663_low_2 (Length: 559)
Name: NF5663_low_2
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5663_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 54 - 544
Target Start/End: Original strand, 33855849 - 33856355
Alignment:
| Q |
54 |
ttctcatttctacaatttattgcatcaacatgtgaatgtgagtgtcatgtatg---tccatgtttgtctacatagatagaaaattagcaattctttaatc |
150 |
Q |
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| T |
33855849 |
ttctcatttctacaatttattgcatcaacatgtgaatgtgagtgtcatgtatgatgtccatgtttgtctacatagatagaaaattaacaattctttaatc |
33855948 |
T |
|
| Q |
151 |
tttcattcagtttcatatcaaattgacttataaatatacaaaatctttctgtcaaaatcaaactatacaaaatctattctatttttattatatctctaag |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33855949 |
tttcattcagtttcatatcaaattgacttataaatatacaaaatctttctgtcaaattcaaactatacaaaatctattttatttttattatatctctaag |
33856048 |
T |
|
| Q |
251 |
atagattcaatttcaacataaacatatacattgacacttattcaattcatcgtattctacaacatttacaaaatacaaatag-------------cacat |
337 |
Q |
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| T |
33856049 |
atagattcaattccaacataaacatatacatcgacacttattcaattcatcgtattctacaacatttacaaaatacaaataggataccattttcacacat |
33856148 |
T |
|
| Q |
338 |
catgtccaaatttcaatcattcagcaattctttgtaaacaagaaaacgaaagaaagagaattataccttctcctgataccgcttcggccagcgcagttta |
437 |
Q |
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| T |
33856149 |
catgtccaaatttcaatcattcagcagttctttgtaaacaagaaaacgaaagaaagagaagtataccttctcctgataccgcttcggccagcgcagttta |
33856248 |
T |
|
| Q |
438 |
gccacctctattggaattggatcccctataaatttggagttggaaacttcattatcaccaccgtcaacattcatcggatcagattcagtctttggctcct |
537 |
Q |
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| T |
33856249 |
gctgcctctattggaattggatcccctagaaatttggagctggaaacttcattatcaccaccgtcaacattcatcggatcggattcagtctttggctcct |
33856348 |
T |
|
| Q |
538 |
tcttaac |
544 |
Q |
| |
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||||||| |
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| T |
33856349 |
tcttaac |
33856355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 81 - 275
Target Start/End: Original strand, 33855436 - 33855635
Alignment:
| Q |
81 |
acatgtgaatgtgagtgtcatgta---tgtccatgtttgtctacatagatagaaaattagcaattctttaatctttcattcagttt-catatcaaattga |
176 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||||| || | ||||||||||| ||||||||| |||| |||| || || ||||||||||||| |
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| T |
33855436 |
acatgtgaatgtaagtgtcatgtacaatgtccatgtttgtcttcacacatagaaaattaagaattctttattcttgcatttaggttgcatatcaaattga |
33855535 |
T |
|
| Q |
177 |
cttataaatatacaaaatctttctgtcaaaatcaaa-ctatacaaaatctattctatttttattatatctctaagatagattcaatttcaacataaacat |
275 |
Q |
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| T |
33855536 |
cttttaacttcacaatatctttctgtcaaaagaaaaactatacaaaatatattttatttttattatatttctacaatatattcaatttcaatatatacat |
33855635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33855815 - 33855869
Alignment:
| Q |
1 |
tagaacaaacatgcacatgtgattcaatttatcttactcatttctacaatttatt |
55 |
Q |
| |
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| T |
33855815 |
tagaacaaatacgcacatgtgattcaatttatctttctcatttctacaatttatt |
33855869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 403 - 540
Target Start/End: Complemental strand, 28214181 - 28214044
Alignment:
| Q |
403 |
ccttctcctgataccgcttcggccagcgcagtttagccacctctattggaattggatcccctataaatttggagttggaaacttcattatcaccaccgtc |
502 |
Q |
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|||||||| ||||||| ||||||||||||||||||||| ||| || |||| ||||| | | ||||||||||||||||||||||| |||||| ||||| |
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| T |
28214181 |
ccttctccagataccgtttcggccagcgcagtttagcctcctttaacagaatcggatctctgagaaatttggagttggaaacttcatcatcacccccgtc |
28214082 |
T |
|
| Q |
503 |
aacattcatcggatcagattcagtctttggctccttct |
540 |
Q |
| |
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||||||||||||| ||| |||| ||||||||| ||||| |
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| T |
28214081 |
aacattcatcggaacagtttcactctttggcttcttct |
28214044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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