View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5663_low_3 (Length: 506)

Name: NF5663_low_3
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5663_low_3
NF5663_low_3
[»] chr6 (20 HSPs)
chr6 (271-403)||(31290833-31290965)
chr6 (14-84)||(27525619-27525689)
chr6 (202-346)||(26629201-26629346)
chr6 (202-346)||(26735177-26735322)
chr6 (275-381)||(26963980-26964086)
chr6 (424-506)||(26964088-26964170)
chr6 (275-381)||(26650739-26650845)
chr6 (424-506)||(26650847-26650929)
chr6 (275-381)||(26756707-26756813)
chr6 (424-506)||(26756815-26756897)
chr6 (335-404)||(27652757-27652826)
chr6 (382-438)||(27422832-27422888)
chr6 (345-404)||(26640274-26640331)
chr6 (345-404)||(26746240-26746297)
chr6 (416-455)||(26629362-26629401)
chr6 (416-455)||(26735338-26735377)
chr6 (362-404)||(27506761-27506803)
chr6 (283-327)||(26964723-26964767)
chr6 (409-506)||(27606872-27606969)
chr6 (202-262)||(27422971-27423031)
[»] chr1 (3 HSPs)
chr1 (14-90)||(14648652-14648728)
chr1 (14-90)||(14658442-14658518)
chr1 (14-85)||(17654925-17654992)
[»] scaffold0713 (1 HSPs)
scaffold0713 (14-85)||(3487-3558)
[»] chr5 (1 HSPs)
chr5 (14-86)||(27199831-27199903)
[»] scaffold0003 (2 HSPs)
scaffold0003 (382-438)||(64475-64531)
scaffold0003 (202-262)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (354-405)||(18719305-18719354)
chr4 (354-404)||(18674703-18674751)
chr4 (354-401)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 271 - 403
Target Start/End: Original strand, 31290833 - 31290965
Alignment:
Q  271 tgttgtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgt 370  Q
    |||||||| || |||||||||||||||||  ||||||||||||| | ||| |||||| ||||| ||||| |||||||||||  |||||||||||||||||    
T  31290833 tgttgtgggaacatttatatgtatgaactagatggtataaagaagcttttttcctatcaaattttgttttgatttggcaaatggaagtggagaatttcgt 31290932  T
Q  371 ttcataactcaaagttttggttttgtacttcca 403  Q
    |||||||||||||||||||||||||||||||||    
T  31290933 ttcataactcaaagttttggttttgtacttcca 31290965  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 27525689 - 27525619
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatt 84  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27525689 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtgtacatctatttcatttaattactattatt 27525619  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 26629201 - 26629346
Alignment:
Q  202 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 301  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26629201 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26629300  T
Q  302 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 346  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26629301 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26629346  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 26735177 - 26735322
Alignment:
Q  202 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 301  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26735177 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26735276  T
Q  302 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 346  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26735277 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26735322  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 26963980 - 26964086
Alignment:
Q  275 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 374  Q
    |||||||  ||||||||||||||||| |||||||| | || ||||| |||||| ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26963980 gtggaaacgtttatatgtatgaacttgatggtatacaaaagcctttttcctatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26964079  T
Q  375 taactca 381  Q
    |||||||    
T  26964080 taactca 26964086  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 26964088 - 26964170
Alignment:
Q  424 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatct 506  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||||| |  |||||||||||||||||||    
T  26964088 tttatctgctactccttatattttttcttccatttctttgtgaagtcttacaatctggtaatccgtttctctttaatgtatct 26964170  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 26650739 - 26650845
Alignment:
Q  275 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 374  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26650739 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26650838  T
Q  375 taactca 381  Q
    |||||||    
T  26650839 taactca 26650845  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 26650847 - 26650929
Alignment:
Q  424 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatct 506  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||    
T  26650847 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatct 26650929  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 26756707 - 26756813
Alignment:
Q  275 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 374  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26756707 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26756806  T
Q  375 taactca 381  Q
    |||||||    
T  26756807 taactca 26756813  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 26756815 - 26756897
Alignment:
Q  424 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatct 506  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||    
T  26756815 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatct 26756897  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 27652826 - 27652757
Alignment:
Q  335 tgtttcgatttggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 404  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  27652826 tgttttgatctggcaaatggaagtggagaatttcgtttcataactcaaaattttggttttatgcttccaa 27652757  T

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Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 27422888 - 27422832
Alignment:
Q  382 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 438  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  27422888 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 27422832  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 26640274 - 26640331
Alignment:
Q  345 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 404  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26640331  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 26746240 - 26746297
Alignment:
Q  345 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 404  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26746297  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 26629362 - 26629401
Alignment:
Q  416 aatttacttttatctgctactccatatattttttcttcca 455  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26629362 aatttccttttatctgctactccatatattttttcttcca 26629401  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 26735338 - 26735377
Alignment:
Q  416 aatttacttttatctgctactccatatattttttcttcca 455  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26735338 aatttccttttatctgctactccatatattttttcttcca 26735377  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 27506803 - 27506761
Alignment:
Q  362 gaatttcgtttcataactcaaagttttggttttgtacttccaa 404  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  27506803 gaatatcgtttcatagctcaaagttttggttttgtacttccaa 27506761  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 26964723 - 26964767
Alignment:
Q  283 atttatatgtatgaactttatggtataaagaaacctttctcctat 327  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  26964723 atttatatgtatgaacttgatggtataaagaagcctttttcctat 26964767  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 506
Target Start/End: Complemental strand, 27606969 - 27606872
Alignment:
Q  409 aaaaattaatttacttttatctgctactccatatattttttcttccatttcattttgaagt-cttacaaattggtactttgtttctctttaatgtatct 506  Q
    |||||||||| ||||||||||| |||||   ||| |||||||||| |||| ||||| |||| ||||||||||||| |    ||||||||||||||||||    
T  27606969 aaaaattaatatacttttatctcctacttgttatcttttttcttctattt-atttttaagttcttacaaattggttcgacatttctctttaatgtatct 27606872  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
Q  202 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 262  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  27423031 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 27422971  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 14648728 - 14648652
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14648728 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 14648652  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 14658518 - 14658442
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14658518 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 14658442  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 17654925 - 17654992
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattt 85  Q
    |||||||||| ||||||||||||||||||||| ||| | || |||    |||||||||||||||||||||||    
T  17654925 aaagggtgtgagggaaaaatctagtagcttccgtgtctggtttac----atttcatttaattactattattt 17654992  T

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Target: scaffold0713 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 3558 - 3487
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattt 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3558 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctaattcatttaattactattattt 3487  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27199831 - 27199903
Alignment:
Q  14 aaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatttt 86  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27199831 aaagggtgtgtgggaaaaatctagtagcttccgtgttttgtctacatctatttcatttaattactattttttt 27199903  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 64475 - 64531
Alignment:
Q  382 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 438  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  64475 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 64531  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 64332 - 64392
Alignment:
Q  202 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 262  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  64332 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 64392  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 18719354 - 18719305
Alignment:
Q  354 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaat 405  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18719354 gaagtggagaatttcgtttcataagtc--agttttggttttgtacttccaat 18719305  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 18674751 - 18674703
Alignment:
Q  354 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 404  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  18674751 gaagtggagaatttcatttcataaatca--gttttggttttgtacttccaa 18674703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 18692832 - 18692787
Alignment:
Q  354 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttc 401  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||||||    
T  18692832 gaagtggagaatttcatttcataaatc--agttttggttttgtacttc 18692787  T

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