View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5663_low_4 (Length: 396)
Name: NF5663_low_4
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5663_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 35444261 - 35444557
Alignment:
| Q |
10 |
atatatttttgttaaaaagtctggtgaccaaaaatttatttttaagtaaataaatagataatttaaaattcgaacccctactcttacataacgcaacgtc |
109 |
Q |
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| T |
35444261 |
atatatttttgttaaaaagtctggtgaccaaaaatttatttttaagtaaataaatagataagctaaaattcgaacccctactcttgcataacgcgacgtc |
35444360 |
T |
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| Q |
110 |
cgaccaagtcatgctcacgtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaa |
209 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35444361 |
cgtccgagtcatgctcacgtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaa |
35444460 |
T |
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| Q |
210 |
tccgatcatcatgcgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattaccatgttattcaata |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
35444461 |
tccgatcatcatgtgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattactatgttatttaata |
35444557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
298 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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