View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5663_low_5 (Length: 364)
Name: NF5663_low_5
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5663_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 33277040 - 33277374
Alignment:
| Q |
15 |
aaaaattagaaatgaatttcttgtttttactctaannnnnnngtcactaattggacnnnnnnnnngttcattgattcaacnnnnnnnaattgtaatttat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||| | |
|
|
| T |
33277040 |
aaaaattagaaatgaatttcttgtttttactctaatttttttctcactatttggagaaaaaaaaagttcattgattcaactttttttaattgtaattt-t |
33277138 |
T |
|
| Q |
115 |
ttttgtctgaaattgcatttctgcataatcacaaagtaaagtgaaataaacaagtgtctttgtccttttagtgaacatttagtttttgaaatcttaattt |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277139 |
ttgtgtctgaaattgcatttctgcataatcacaaagtaaagtgaaataaacaagtgcctttgtccttttagtgaacatttagtttttgaaatcttaattt |
33277238 |
T |
|
| Q |
215 |
agaagataattaatattaaggaacgtgtgatgttatgcttcaactactaatgagataaagggaacctttatgaatttcaataagaatctttctcccccag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277239 |
agaagataattaatattaaggaacgtgtaatgttatgcttcaactactaatgagataaagggaacctttatgaatttcaataagaatctttctcccccag |
33277338 |
T |
|
| Q |
315 |
aaaaaacaaagactatgcctgccttcaatattttat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277339 |
aaaaaacaaagactatgcctgccttcaatattttat |
33277374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University