View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5663_low_6 (Length: 343)
Name: NF5663_low_6
Description: NF5663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5663_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 4236387 - 4236647
Alignment:
| Q |
7 |
cacctgtcatcagagataaagttagttaatagtcaattaagaattagtta---------ttcttattatcttcttcgtattcatatagactcgtatgtat |
97 |
Q |
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| T |
4236387 |
cacctgtcatcagagataaagtatgttaatggttaattaacaactagttaggttaactattcttattatattcatcatttccatataggctcgtatgtat |
4236486 |
T |
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| Q |
98 |
aaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttcca |
197 |
Q |
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| T |
4236487 |
aaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttcca |
4236586 |
T |
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| Q |
198 |
ccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaacaatgttaa |
258 |
Q |
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| T |
4236587 |
ctgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaatgttaa |
4236647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
117 |
atcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
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| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
118 |
tcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
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| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 129 - 258
Target Start/End: Original strand, 6185611 - 6185740
Alignment:
| Q |
129 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
228 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
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| Q |
229 |
cttaatgccgacaagtcctaacaatgttaa |
258 |
Q |
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| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaa |
6185740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
117 |
atcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
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| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
43 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
105 |
Q |
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| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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