View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5664-Insertion-1 (Length: 486)
Name: NF5664-Insertion-1
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5664-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 34671567 - 34671089
Alignment:
| Q |
8 |
gttgcaatgcttattagaagaatcgattgcggcggtgtttggttgttgaagaagattgataagtgaccaaaacacatctatcctcgtcacatgtctattt |
107 |
Q |
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| T |
34671567 |
gttgcaatgcttattagaagaatcgattgcggcggtgtttggttgttgaagaagattgataagtgaccaaaacacatctatcctcgtcacatgtctattt |
34671468 |
T |
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| Q |
108 |
gcctgttgtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaaaattgaaatcacttatatgccaccattt |
207 |
Q |
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| T |
34671467 |
gcctgttgtacaatacgataattgatatgtaaaccgacatttttagcttaagtagaaaaatgacaaagtaaaaattgaaatcacttatatgccaccattt |
34671368 |
T |
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| Q |
208 |
acttgttttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttttttcttccttgtttccatctttgctttt |
307 |
Q |
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| T |
34671367 |
acttgttttattttaaatatttcaatcaaatattaaatattttacctcaacaataaagtgtgcccatagttttttcttccttgtttccatctttgctttt |
34671268 |
T |
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| Q |
308 |
aagatattcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatctgcagcagaacaatgcaaatgagttcac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671267 |
aagatattcagcccgaaacctcgaattatgtcgactatctcaaggaagaaaccttgatcttcacaaagaatctgcagcagaacaatgcaaatgagttcac |
34671168 |
T |
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| Q |
408 |
atagcatagactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggccaggtgat |
486 |
Q |
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| T |
34671167 |
atagcatagactataaaattttcaaatcatatacattcttattcggtttcttacctctataagcatttggccaggtgat |
34671089 |
T |
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