View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5664-Insertion-2 (Length: 1140)

Name: NF5664-Insertion-2
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5664-Insertion-2
NF5664-Insertion-2
[»] chr8 (9 HSPs)
chr8 (243-1051)||(2763977-2764788)
chr8 (8-246)||(2764833-2765071)
chr8 (537-589)||(32927952-32928004)
chr8 (545-607)||(2778581-2778643)
chr8 (545-608)||(35495058-35495121)
chr8 (487-609)||(14930140-14930262)
chr8 (537-607)||(32767447-32767519)
chr8 (537-590)||(37641610-37641663)
chr8 (545-590)||(43492209-43492254)
[»] chr1 (22 HSPs)
chr1 (491-611)||(48832904-48833024)
chr1 (536-587)||(4458445-4458496)
chr1 (537-588)||(15268151-15268202)
chr1 (552-618)||(25061269-25061335)
chr1 (545-590)||(213253-213298)
chr1 (537-597)||(3016222-3016280)
chr1 (546-607)||(18325063-18325124)
chr1 (537-656)||(34571088-34571208)
chr1 (536-605)||(45557365-45557430)
chr1 (539-618)||(10324538-10324617)
chr1 (487-574)||(11049260-11049347)
chr1 (537-588)||(30557562-30557613)
chr1 (532-607)||(34875044-34875119)
chr1 (501-583)||(1233329-1233411)
chr1 (563-609)||(33693088-33693134)
chr1 (595-656)||(184933-184994)
chr1 (546-607)||(5268288-5268349)
chr1 (537-590)||(7524173-7524226)
chr1 (550-599)||(12119383-12119432)
chr1 (546-607)||(34915135-34915196)
chr1 (546-607)||(35961437-35961498)
chr1 (538-599)||(48548977-48549038)
[»] chr6 (8 HSPs)
chr6 (488-563)||(20669679-20669754)
chr6 (522-611)||(882731-882820)
chr6 (537-599)||(34620946-34621008)
chr6 (537-599)||(34748383-34748445)
chr6 (537-589)||(4910968-4911020)
chr6 (552-607)||(7952670-7952725)
chr6 (537-608)||(8856367-8856438)
chr6 (537-599)||(32888920-32888982)
[»] chr2 (10 HSPs)
chr2 (537-606)||(15220817-15220886)
chr2 (483-618)||(32307091-32307225)
chr2 (538-607)||(33502298-33502364)
chr2 (537-607)||(16518838-16518908)
chr2 (537-589)||(33019129-33019181)
chr2 (522-569)||(44147944-44147991)
chr2 (537-599)||(1976827-1976889)
chr2 (537-607)||(4894112-4894182)
chr2 (568-618)||(12110918-12110968)
chr2 (537-590)||(44439314-44439367)
[»] chr4 (16 HSPs)
chr4 (487-654)||(22683874-22684042)
chr4 (537-608)||(25319108-25319179)
chr4 (537-607)||(25927366-25927436)
chr4 (485-611)||(43868144-43868270)
chr4 (534-607)||(33843768-33843841)
chr4 (537-632)||(55927700-55927795)
chr4 (487-597)||(43628128-43628238)
chr4 (537-588)||(22250286-22250337)
chr4 (563-618)||(22699757-22699812)
chr4 (563-618)||(22980718-22980773)
chr4 (563-618)||(22994305-22994360)
chr4 (537-575)||(16552015-16552053)
chr4 (537-599)||(36639855-36639917)
chr4 (553-590)||(8604594-8604631)
chr4 (540-605)||(17898085-17898150)
chr4 (537-586)||(35729005-35729054)
[»] chr3 (10 HSPs)
chr3 (503-623)||(190852-190971)
chr3 (522-590)||(35253439-35253507)
chr3 (552-607)||(1441362-1441417)
chr3 (537-623)||(1114898-1114984)
chr3 (537-604)||(46853492-46853559)
chr3 (537-591)||(31708210-31708264)
chr3 (536-590)||(51667194-51667248)
chr3 (546-607)||(31013087-31013148)
chr3 (554-599)||(41591316-41591361)
chr3 (569-618)||(42644298-42644347)
[»] chr7 (8 HSPs)
chr7 (549-607)||(40491650-40491708)
chr7 (545-599)||(40561721-40561775)
chr7 (546-607)||(12306792-12306853)
chr7 (547-607)||(45557435-45557495)
chr7 (480-559)||(18349778-18349857)
chr7 (546-657)||(40795894-40796005)
chr7 (552-608)||(1766465-1766521)
chr7 (537-599)||(22310422-22310484)
[»] scaffold0361 (1 HSPs)
scaffold0361 (522-599)||(14077-14154)
[»] scaffold0020 (1 HSPs)
scaffold0020 (552-612)||(138530-138590)
[»] chr5 (5 HSPs)
chr5 (549-596)||(32693762-32693809)
chr5 (522-581)||(37882709-37882768)
chr5 (545-607)||(8591549-8591611)
chr5 (539-585)||(28304849-28304895)
chr5 (545-590)||(42858325-42858370)
[»] scaffold0172 (1 HSPs)
scaffold0172 (568-618)||(15273-15323)


Alignment Details
Target: chr8 (Bit Score: 732; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 243 - 1051
Target Start/End: Complemental strand, 2764788 - 2763977
Alignment:
Q  243 tttgtatgtttagtcattcttctaagtgtatgtttgatatcaaaaatgattctagagacataattgattttgacatgtttgattcaattggaattggttt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764788 tttgtatgtttagtcattcttctaagtgtatgtttgatatcaaaaatgattctagagacataattgattttgacatgtttgattcaattggaattggttt 2764689  T
Q  343 tgcatctagagttgagtgtatgttagcttgggcgtacccaactaattaaacgtacatttactttgaagctcttgttagtagctttgttacattcctgcga 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764688 tgcatctagagttgagtgtatgttagcttgggcgtacccaactaattaaacgtacatttactttgaagctcttgttagtagctttgttacattcctgcga 2764589  T
Q  443 ttagagcatcctatatgcggttcaagacatacaacggttttaatttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaattta 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2764588 ttagagcatcctatatgcggttcaagacatacaacggttttaatttgaagttaagatttgtagcttttggctccaaatgtgatttttactttcgaattta 2764489  T
Q  543 tggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaagtttaggaaatcaacttttgtcac 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764488 tggttcaactcacttttacgtgaatgtatccaaatataaatcactttatattcaacttacttttaactaatatcaagtttaggaaatcaacttttgtcac 2764389  T
Q  643 tgcagaaccaaacatgcacggactctattattgtttttagccatatgggttactttcttctctttgcattaatagaaaaactgggcatcattaacatgta 742  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2764388 tgcagaaccaaacatgcacggactctattattgtttttagccatatgggttactttcttctctttgcattaatagaaaaacttggcatcattaacatgta 2764289  T
Q  743 gaagaaactcattttggcaggtggagtataggagaacaatcaactgctttagcaacttctactgcttctagtttacaggtttgcttgctttcagctgcta 842  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764288 gaagaaactcattttggcaggtggagtataggagaacaatcaactgctttagcaacttctactgcttctagtttacaggtttgcttgctttcagctgcta 2764189  T
Q  843 ttgaaaatgctaccaataatctagtgctgtttcgtgtactaaagaacgtatgaaaactgattgttctcttgctctgctatcagcatacttaagactattt 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764188 ttgaaaatgctaccaataatctagtgctgtttcgtgtactaaagaacgtatgaaaactgattgttctcttgctctgctatcagcatacttaagactattt 2764089  T
Q  943 gtgtatgagtactgattttnnnnnnncaccttctttcagagag-tatagtttcttacaaagtattcttat-gtttcaac-tttgcat-ctttattgggct 1038  Q
    |||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| |||||||||  |    
T  2764088 gtgtatgagtactgattttaaaaaaacaccttctttcagagagttatagtttcttacaaagta-tcttatggtttcaacttttgcatcctttattggctt 2763990  T
Q  1039 gacctgcatcatg 1051  Q
    |||||||||||||    
T  2763989 gacctgcatcatg 2763977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 2765071 - 2764833
Alignment:
Q  8 aaaaattgtgtctttcgtgtaaaggttgtgtttttctcatgttggtgtttgtcattttggatattcgtttgggattgtatgacaaattatgactttagtg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2765071 aaaaattgtgtctttcgtgtaaaggttgtgtttttctcatgttggtgtttgtcattttggatattcgtttgggattgtatgacaaattatgactttagtg 2764972  T
Q  108 taaatgttgtgtttttcgcatgtgggtatttgttaatttgtgtcttcttttggaattttagggtagtgatagtaattgaagtgaaaattttgaatgtgga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764971 taaatgttgtgtttttcgcatgtgggtatttgttaatttgtgtcttcttttggaattttagggtagtgatagtaattgaagtgaaaattttgaatgtgga 2764872  T
Q  208 ttattgttgtttgtggcttcttcacttttgtggtgtttg 246  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2764871 ttattgttgtttgtggcttcttcacttttgtggtgtttg 2764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 537 - 589
Target Start/End: Original strand, 32927952 - 32928004
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttt 589  Q
    ||||||| ||||||||||||||||| |||||||||||||| | ||||||||||    
T  32927952 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcacttt 32928004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 545 - 607
Target Start/End: Original strand, 2778581 - 2778643
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||||||||| | | ||| |||||||| |||||||||||||| ||||||| |||||||    
T  2778581 gttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcactttta 2778643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 35495058 - 35495121
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaa 608  Q
    |||||||| |||||||| ||||| |||||||| | |||||||||||| ||||||  ||||||||    
T  35495058 gttcaacttacttttacatgaatatatccaaacacaaatcactttatattcaacccacttttaa 35495121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 487 - 609
Target Start/End: Original strand, 14930140 - 14930262
Alignment:
Q  487 ttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcac 586  Q
    |||||| | |||| ||||||||||  |||||||  |  ||||||  ||| |||||||  ||||||||||| |||  ||||| |||||||  ||| |||||    
T  14930140 ttgaagctgagatttgtagctttttcctccaaacatattttttatcttcaaatttatttttcaactcactattatttgaatatatccaatcatagatcac 14930239  T
Q  587 tttatgttcaacttacttttaac 609  Q
    ||||  |||||||||||||||||    
T  14930240 tttacattcaacttacttttaac 14930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 32767447 - 32767519
Alignment:
Q  537 aatttatggttcaactcactttt--acgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||| |||||||||||||||  || |||||||||||||| |||||||| ||||  | ||||| |||||||    
T  32767447 aatttattgttcaactcacttttacacatgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 37641610 - 37641663
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||| |||||||||||||||| || ||| |||||||| |||| ||||||||    
T  37641610 aatttattgttcaactcacttttaggtaaatttatccaaacataagtcacttta 37641663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 545 - 590
Target Start/End: Complemental strand, 43492254 - 43492209
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    |||||||| |||||||| |||||||||||||| |||||||| ||||    
T  43492254 gttcaacttacttttacatgaatgtatccaaacataaatcatttta 43492209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 5e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 491 - 611
Target Start/End: Original strand, 48832904 - 48833024
Alignment:
Q  491 agttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||| ||| ||||||||||| |||||||||||||||||||  || |||||||  || ||||||| |||| |||||| ||||| || ||||| ||||| |    
T  48832904 agttaggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactcacgtttatgtgaatatatccgaacataaaccacttaa 48833003  T
Q  591 tgttcaacttacttttaacta 611  Q
      ||||||| |||||||||||    
T  48833004 cattcaactcacttttaacta 48833024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 4458445 - 4458496
Alignment:
Q  536 gaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcact 587  Q
    |||||||| || ||| |||||||||| |||||||||||||||||||||||||    
T  4458445 gaatttattgtacaattcacttttacctgaatgtatccaaatataaatcact 4458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 15268151 - 15268202
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactt 588  Q
    |||||||||||||||||||| |||| |||||||||  |||||||||||||||    
T  15268151 aatttatggttcaactcactattacatgaatgtatttaaatataaatcactt 15268202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 25061269 - 25061335
Alignment:
Q  552 tcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    ||||||||| || || ||||||||| |||||||| ||||||||||||| ||||||||| || |||||    
T  25061269 tcacttttatgttaaggtatccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaa 25061335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 545 - 590
Target Start/End: Complemental strand, 213298 - 213253
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||    
T  213298 gttcaactcacttttacatgcatgtatccaaacataaatcacttta 213253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 3016222 - 3016280
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaa 597  Q
    |||||| |||||||||||||||||| |||||||||||||| ||  |||||||||| |||||    
T  3016222 aatttacggttcaactcacttttacatgaatgtatccaaacat--atcactttatattcaa 3016280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 546 - 607
Target Start/End: Complemental strand, 18325124 - 18325063
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||| ||||||||| |||||||||||| | |||||||||||||| ||||| | |||||||    
T  18325124 ttcaacccacttttacatgaatgtatccatacataaatcactttatattcaagtgactttta 18325063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 537 - 656
Target Start/End: Complemental strand, 34571208 - 34571088
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaagttta-ggaaatcaactt 635  Q
    ||||||| |||||| |||||||||| | || |||||||||||||||| |  |||  ||||||| ||||||||  |  ||||| |||| | ||||||| ||    
T  34571208 aatttattgttcaattcacttttacctaaacgtatccaaatataaatgaacttacattcaactcacttttaatcagaatcaattttatgaaaatcaattt 34571109  T
Q  636 ttgtcactgcagaaccaaaca 656  Q
    ||||||| ||| |||||||||    
T  34571108 ttgtcaccgcataaccaaaca 34571088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 536 - 605
Target Start/End: Original strand, 45557365 - 45557430
Alignment:
Q  536 gaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttt 605  Q
    |||||||| |||||||||||||||||    ||||| ||||| |||||||||||||||||| ||| |||||    
T  45557365 gaatttattgttcaactcacttttac----atgtaaccaaacataaatcactttatgttcgactcacttt 45557430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 539 - 618
Target Start/End: Original strand, 10324538 - 10324617
Alignment:
Q  539 tttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    ||||| |||||||| | ||||| | ||||||||||||||||||| |||||||  |||||||  ||| ||||||| |||||    
T  10324538 tttattgttcaacttagttttatgcgaatgtatccaaatataaaccactttacattcaactcccttataactaaaatcaa 10324617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 487 - 574
Target Start/End: Original strand, 11049260 - 11049347
Alignment:
Q  487 ttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatcca 574  Q
    |||||| || ||| |||||||||||  || |||  ||||||||||   | ||||||| |||||| |||||||||||||||||||||||    
T  11049260 ttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 30557562 - 30557613
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactt 588  Q
    ||||||| ||||||||||||||||  |||||||||||||| | |||||||||    
T  30557562 aatttatagttcaactcacttttatatgaatgtatccaaacacaaatcactt 30557613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 532 - 607
Target Start/End: Complemental strand, 34875119 - 34875044
Alignment:
Q  532 tttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||| ||||||| ||||||| ||||||| | ||||| |||||||| |||||||||||||   |||||| |||||||    
T  34875119 tttcaaatttattgttcaacccacttttgcatgaatttatccaaagataaatcactttacaatcaactgactttta 34875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 583
Target Start/End: Original strand, 1233329 - 1233411
Alignment:
Q  501 tgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaat 583  Q
    |||||||||||||||  ||  ||||||||||  || ||||||| ||| |||||||||| || |||||||||| ||| ||||||    
T  1233329 tgtagcttttggctctgaacatgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaat 1233411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 563 - 609
Target Start/End: Original strand, 33693088 - 33693134
Alignment:
Q  563 tgaatgtatccaaatataaatcactttatgttcaacttacttttaac 609  Q
    |||||||||||||| ||||||||||||| ||||||||  ||||||||    
T  33693088 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaac 33693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 656
Target Start/End: Complemental strand, 184994 - 184933
Alignment:
Q  595 caacttacttttaactaatatcaagtttaggaaatcaacttttgtcactgcagaaccaaaca 656  Q
    |||||||||||||||||  ||||| ||||  ||||||  ||||||||| |||||||||||||    
T  184994 caacttacttttaactacaatcaaatttacaaaatcattttttgtcaccgcagaaccaaaca 184933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 5268288 - 5268349
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||||||||| ||||| ||| |||| | |||||||||||  ||||||| |||||||    
T  5268288 ttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcactttta 5268349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 7524173 - 7524226
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||| ||||||||||||||||| | ||||| |||||| | |||||||||||    
T  7524173 aatttatagttcaactcacttttacataaatgtgtccaaacacaaatcacttta 7524226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 550 - 599
Target Start/End: Original strand, 12119383 - 12119432
Alignment:
Q  550 actcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||||||||| ||| || ||||||| |||||||||||||| |||||||    
T  12119383 actcacttttacatgattgaatccaaacataaatcactttatattcaact 12119432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 34915135 - 34915196
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||||||||| ||||||||| |||| |||||||| ||||  | ||||| |||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttta 34915196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 35961437 - 35961498
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||||||||| |||||||||  ||| |||||||| ||||  ||||||| |||||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttta 35961498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 48549038 - 48548977
Alignment:
Q  538 atttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||| ||||||||||||||||| | |||||||| ||| |||||||| ||||  |||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaact 48548977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 488 - 563
Target Start/End: Complemental strand, 20669754 - 20669679
Alignment:
Q  488 tgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgt 563  Q
    |||||||||||  ||||| ||||| ||||||||||||||||||| ||| |||||| ||||||||||||||| ||||    
T  20669754 tgaagttaagaattgtagtttttgcctccaaatgtgatttttacattcaaatttacggttcaactcactttcacgt 20669679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 522 - 611
Target Start/End: Original strand, 882731 - 882820
Alignment:
Q  522 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaacta 611  Q
    |||||||||| ||| ||||||| ||| ||||||||||| | |||||||||||||| |||||||| ||||  ||||||| | |||||||||    
T  882731 tgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaacta 882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 34620946 - 34621008
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||||  |||||||||||||||| | |||||||||||| |||||||||||||  |||||||    
T  34620946 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaact 34621008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 34748383 - 34748445
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||||  |||||||||||||||| | |||||||||||| |||||||||||||  |||||||    
T  34748383 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaact 34748445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 537 - 589
Target Start/End: Original strand, 4910968 - 4911020
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttt 589  Q
    ||||||| |||| |||||||||||| | |||||||||||| ||||||||||||    
T  4910968 aatttatagttcgactcacttttacataaatgtatccaaacataaatcacttt 4911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 7952725 - 7952670
Alignment:
Q  552 tcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||| | ||||| |||||||||||| |||||||||| ||||||| |||||||    
T  7952725 tcacttttgcatgaatatatccaaatatacatcactttatattcaactcactttta 7952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 537 - 608
Target Start/End: Original strand, 8856367 - 8856438
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaa 608  Q
    |||||||| ||||||||||||| || |||||||||||||| | |||||| ||||  ||||||  ||||||||    
T  8856367 aatttatgtttcaactcactttcacatgaatgtatccaaacacaaatcattttaccttcaaccaacttttaa 8856438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 32888982 - 32888920
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    ||||||| ||||||||||||||||| | ||| ||| |||| |||||||| ||||| |||||||    
T  32888982 aatttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaact 32888920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 537 - 606
Target Start/End: Complemental strand, 15220886 - 15220817
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttt 606  Q
    ||||||| |||||||||||||| || |||||||||||||| |||||||||||||  ||||||| ||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 483 - 618
Target Start/End: Original strand, 32307091 - 32307225
Alignment:
Q  483 taatttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaa 582  Q
    |||||||||| |||||| |||||  |||| |||||||  ||||||||||  |   |||||| |||||||||||||||| |||||| |||||||||||||     
T  32307091 taatttgaagctaagatttgtagtgtttg-ctccaaacatgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataag 32307189  T
Q  583 tcactttatgttcaacttacttttaactaatatcaa 618  Q
     || ||||  ||| ||| | |||||||||| |||||    
T  32307190 ccattttacattcgactcaattttaactaaaatcaa 32307225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 538 - 607
Target Start/End: Original strand, 33502298 - 33502364
Alignment:
Q  538 atttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||| |||||||||||||||||   |||||||||||| | |||||||||||  |||||||||||||||    
T  33502298 atttatagttcaactcacttttac---aatgtatccaaacacaaatcactttacattcaacttactttta 33502364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 16518838 - 16518908
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||| ||||||||||||||||| |||||||||||||| | |||||| ||||   |||||| |||||||    
T  16518838 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcactttta 16518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 537 - 589
Target Start/End: Complemental strand, 33019181 - 33019129
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttt 589  Q
    ||||||| ||||||||||||||||| |||||| ||||||| | ||||||||||    
T  33019181 aatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 44147991 - 44147944
Alignment:
Q  522 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgt 569  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||    
T  44147991 tgatttttactttcaaatttattgttcaactcacttttagatgaatgt 44147944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 1976889 - 1976827
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||| || |||||  |||||||    
T  1976889 aatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaact 1976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 607
Target Start/End: Complemental strand, 4894182 - 4894112
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||  ||||| |||||||||  |||||||||| ||| |||||||||||||  ||||||||| |||||    
T  4894182 aatttattattcaagtcacttttaaatgaatgtatctaaacataaatcactttaccttcaacttaatttta 4894112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 12110918 - 12110968
Alignment:
Q  568 gtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    ||||||||| |||||||||||||| ||||||| ||||||||| || |||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaa 12110968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 44439314 - 44439367
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||| ||||||||||||||||| | ||  |||||||| |||||||||||||    
T  44439314 aatttattgttcaactcacttttacataaacatatccaaacataaatcacttta 44439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 487 - 654
Target Start/End: Original strand, 22683874 - 22684042
Alignment:
Q  487 ttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcac 586  Q
    |||||| || ||| |||||||||||  || ||| ||||||||||| ||  ||||||| ||||||||| ||||||| | ||||| |||||| ||||| ||     
T  22683874 ttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccat 22683973  T
Q  587 tttatgttcaacttacttttaactaatatcaagt-ttaggaaatcaacttttgtcactgcagaaccaaa 654  Q
    ||||  ||||||| |||||||| ||| ||||| |  |   ||||| | |||||||||||||||||||||    
T  22683974 tttactttcaactcacttttaagtaaaatcaattcatctaaaatctatttttgtcactgcagaaccaaa 22684042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 537 - 608
Target Start/End: Original strand, 25319108 - 25319179
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaa 608  Q
    ||||||| ||||||||||||||||||| |||||||| ||| |||||  ||||||  ||||||||||||||||    
T  25319108 aatttattgttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaacttacttttaa 25319179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 25927366 - 25927436
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||| || ||||  ||||||| |||||||    
T  25927366 aatttatggctcaattcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttta 25927436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 485 - 611
Target Start/End: Original strand, 43868144 - 43868270
Alignment:
Q  485 atttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatc 584  Q
    ||||||| ||||||| ||||||||||  ||| |||  | |||||||| |   |||||||  || || |||||||||| | |||||||||||| | |||||    
T  43868144 atttgaaattaagatttgtagcttttaactcaaaagttaatttttacatataaatttataatttaagtcacttttacataaatgtatccaaagacaaatc 43868243  T
Q  585 actttatgttcaacttacttttaacta 611  Q
    ||||||  |||||||||||||||||||    
T  43868244 actttactttcaacttacttttaacta 43868270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 33843768 - 33843841
Alignment:
Q  534 tcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||| |||||||||||| |||| ||||| |||||||| |||||||||||||  | ||||| |||||||    
T  33843768 tcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcactttta 33843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 537 - 632
Target Start/End: Complemental strand, 55927795 - 55927700
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaagtttaggaaatcaa 632  Q
    ||||||| |||||| |||||||||| |||||||||||||| ||||||||| |||  | ||||| | ||||||||   ||||| |||| ||||||||    
T  55927795 aatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacattaactccaactcaattttaactggaatcaattttacgaaatcaa 55927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 487 - 597
Target Start/End: Original strand, 43628128 - 43628238
Alignment:
Q  487 ttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcac 586  Q
    |||||| |||||| ||||| ||||| |||||||  ||||||| || ||  ||||||| |||||||||   ||||  |||||| |||||||||||||||||    
T  43628128 ttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaactcgtatttatatgaatgcatccaaatataaatcac 43628227  T
Q  587 tttatgttcaa 597  Q
    || || |||||    
T  43628228 ttgatattcaa 43628238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 22250286 - 22250337
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactt 588  Q
    ||||||| |||| | |||||||||| ||||||||||||||| ||||||||||    
T  22250286 aatttattgttcgattcacttttacatgaatgtatccaaatgtaaatcactt 22250337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 563 - 618
Target Start/End: Original strand, 22699757 - 22699812
Alignment:
Q  563 tgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    |||| ||||||||| |||||||||||||  ||||||||||||||||| || |||||    
T  22699757 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaa 22699812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 563 - 618
Target Start/End: Complemental strand, 22980773 - 22980718
Alignment:
Q  563 tgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    |||| ||||||||| |||||||||||||  ||||||||||||||||| || |||||    
T  22980773 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaa 22980718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 563 - 618
Target Start/End: Complemental strand, 22994360 - 22994305
Alignment:
Q  563 tgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    |||| ||||||||| |||||||||||||  ||||||||||||||||| || |||||    
T  22994360 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaa 22994305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 16552015 - 16552053
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaa 575  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  16552015 aatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 36639855 - 36639917
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    ||||||| |||||||  || | ||| |||||||||||||| |||||||||||||| |||||||    
T  36639855 aatttattgttcaacatacctgtacatgaatgtatccaaacataaatcactttatcttcaact 36639917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 553 - 590
Target Start/End: Complemental strand, 8604631 - 8604594
Alignment:
Q  553 cacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  8604631 cacttttacatgaatgtatccaaacataaatcacttta 8604594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 17898150 - 17898085
Alignment:
Q  540 ttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttt 605  Q
    |||| |||||| |||||||||| | ||| |||||||| |||||||||||||  ||||||| |||||    
T  17898150 ttattgttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 35729005 - 35729054
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcac 586  Q
    ||||||| |||||| ||||||| |||||||  ||||||||||||||||||    
T  35729005 aatttattgttcaagtcactttcacgtgaacatatccaaatataaatcac 35729054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 503 - 623
Target Start/End: Original strand, 190852 - 190971
Alignment:
Q  503 tagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttac 602  Q
    ||||||||| |||||||  |||||||| |  || ||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| | || |||| |     
T  190852 tagcttttgcctccaaacatgatttttgcactcaaatttattgttcaactcactttcacgtgaatgtatcc-aatataaatcattttgttttaaactcag 190950  T
Q  603 ttttaactaatatcaagttta 623  Q
    ||| |||||| ||||| ||||    
T  190951 tttcaactaaaatcaatttta 190971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 522 - 590
Target Start/End: Complemental strand, 35253507 - 35253439
Alignment:
Q  522 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    ||||||||||  || |||||||  |||||||||||||||| ||| ||| ||||||||||||||||||||    
T  35253507 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 35253439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 1441417 - 1441362
Alignment:
Q  552 tcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||||| |||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcactttta 1441362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 623
Target Start/End: Original strand, 1114898 - 1114984
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaagttta 623  Q
    |||||||||||| ||||||||| || ||||| |||  ||| | |||||||||||| ||||||||| ||||| | || ||||||||||    
T  1114898 aatttatggttctactcactttaacatgaatatatataaacacaaatcactttatattcaacttatttttagcgaaaatcaagttta 1114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 537 - 604
Target Start/End: Complemental strand, 46853559 - 46853492
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactt 604  Q
    ||||||| ||||||||||||||||| | ||| |||||  | |||||||||||||  ||||||||||||    
T  46853559 aatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttactt 46853492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 31708264 - 31708210
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttat 591  Q
    |||||||  |||||||||||||||| |||||||||||||| | ||| ||||||||    
T  31708264 aatttataattcaactcacttttacatgaatgtatccaaacacaaaccactttat 31708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 590
Target Start/End: Original strand, 51667194 - 51667248
Alignment:
Q  536 gaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    |||||||| ||||||| ||||||||| ||||| || ||||| |||||||||||||    
T  51667194 gaatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttta 51667248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 31013087 - 31013148
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||||| ||| |||||| ||||||| | |||||||||||| | ||||| |||||||    
T  31013087 ttcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcactttta 31013148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 554 - 599
Target Start/End: Complemental strand, 41591361 - 41591316
Alignment:
Q  554 acttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||||| |||||||||||||| |||||||||||||  |||||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaact 41591316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 42644298 - 42644347
Alignment:
Q  569 tatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    |||||||| |||||||||||||  ||||||| |||||||||||| |||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaa 42644347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 549 - 607
Target Start/End: Original strand, 40491650 - 40491708
Alignment:
Q  549 aactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||||||| |||||||||||||| |||||||||||||  ||||||| |||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcactttta 40491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 545 - 599
Target Start/End: Complemental strand, 40561775 - 40561721
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||  |||||||    
T  40561775 gttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaact 40561721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 12306792 - 12306853
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    |||||||||||||||| ||||| || ||||| |||||||||||||| ||||||| |||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcactttta 12306853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 547 - 607
Target Start/End: Original strand, 45557435 - 45557495
Alignment:
Q  547 tcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||||||||| |||||||||||||| | |||||||||||  ||||||| |||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 480 - 559
Target Start/End: Original strand, 18349778 - 18349857
Alignment:
Q  480 ttttaatttgaagttaagatatgtagcttttggctccaaatgtgatttttactttcgaatttatggttcaactcactttt 559  Q
    |||||||||||||||| | | ||||||||||| || |||| |||||||||||  || ||||||| |||||||||| ||||    
T  18349778 ttttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactcaatttt 18349857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 546 - 657
Target Start/End: Complemental strand, 40796005 - 40795894
Alignment:
Q  546 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaatatcaagtttaggaaatcaacttttgtcactgc 645  Q
    ||||| |||||||||| |||||||||||||  ||||| |||||||  ||||| | | ||||| |||| ||||| ||||  ||||||| ||||||||  ||    
T  40796005 ttcaaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcatttttacctaacatcaattttacaaaatcaatttttgtcaaagc 40795906  T
Q  646 agaaccaaacat 657  Q
    | ||||||||||    
T  40795905 aaaaccaaacat 40795894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 552 - 608
Target Start/End: Original strand, 1766465 - 1766521
Alignment:
Q  552 tcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaa 608  Q
    ||||||||| || || |||||||||||||||||| |||| |||||||| ||||||||    
T  1766465 tcacttttatgttaaggtatccaaatataaatcaatttaggttcaactcacttttaa 1766521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 22310484 - 22310422
Alignment:
Q  537 aatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    |||||||  ||||| ||||||||||| ||||||||||||| |||||||  ||||| |||||||    
T  22310484 aatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaact 22310422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 522 - 599
Target Start/End: Complemental strand, 14154 - 14077
Alignment:
Q  522 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaact 599  Q
    ||||||||||  || |||||||  ||||||||||||| || |||||||||||||| |||||||||||||  |||||||    
T  14154 tgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaact 14077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 552 - 612
Target Start/End: Complemental strand, 138590 - 138530
Alignment:
Q  552 tcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttacttttaactaa 612  Q
    ||||||||| || || ||||||||| |||||||| |||||||||| || ||||||||||||    
T  138590 tcacttttatgttaaggtatccaaacataaatcaatttatgttcagctcacttttaactaa 138530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 32693762 - 32693809
Alignment:
Q  549 aactcacttttacgtgaatgtatccaaatataaatcactttatgttca 596  Q
    |||| |||||| | ||||||||||||||||||||||||||||| ||||    
T  32693762 aactgacttttgcatgaatgtatccaaatataaatcactttatattca 32693809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 522 - 581
Target Start/End: Complemental strand, 37882768 - 37882709
Alignment:
Q  522 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataa 581  Q
    |||||||||| ||  ||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  37882768 tgatttttacattgaaatgtattgttcaactcacttttacgtaaatgtattcaaatataa 37882709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 607
Target Start/End: Original strand, 8591549 - 8591611
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcactttatgttcaacttactttta 607  Q
    ||||||||||||||||   |||||||||||||||||||||| ||||  ||||  |||||||||    
T  8591549 gttcaactcacttttataggaatgtatccaaatataaatcaatttacattcattttactttta 8591611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 585
Target Start/End: Complemental strand, 28304895 - 28304849
Alignment:
Q  539 tttatggttcaactcacttttacgtgaatgtatccaaatataaatca 585  Q
    ||||| ||||||| |||| |||||||||| |||||||||||||||||    
T  28304895 tttatagttcaacccactgttacgtgaatatatccaaatataaatca 28304849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 545 - 590
Target Start/End: Complemental strand, 42858370 - 42858325
Alignment:
Q  545 gttcaactcacttttacgtgaatgtatccaaatataaatcacttta 590  Q
    |||||||| |||||||| | |||||||||||||||||| |||||||    
T  42858370 gttcaacttacttttacattaatgtatccaaatataaaccacttta 42858325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 15323 - 15273
Alignment:
Q  568 gtatccaaatataaatcactttatgttcaacttacttttaactaatatcaa 618  Q
    ||||||||| |||||||||||||| ||||||| ||||||||| || |||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaa 15273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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