View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5664_high_3 (Length: 256)

Name: NF5664_high_3
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5664_high_3
NF5664_high_3
[»] chr7 (22 HSPs)
chr7 (172-256)||(5859929-5860013)
chr7 (2-82)||(33434658-33434738)
chr7 (172-253)||(33434480-33434561)
chr7 (172-256)||(31971781-31971865)
chr7 (177-253)||(3419048-3419124)
chr7 (171-253)||(10244530-10244612)
chr7 (172-253)||(6585237-6585318)
chr7 (172-253)||(34391533-34391614)
chr7 (172-253)||(47325534-47325615)
chr7 (173-253)||(44353213-44353293)
chr7 (191-253)||(40726140-40726202)
chr7 (187-256)||(37795362-37795431)
chr7 (187-256)||(37795690-37795759)
chr7 (171-256)||(42454380-42454465)
chr7 (187-253)||(35745481-35745547)
chr7 (172-253)||(25161159-25161240)
chr7 (177-239)||(3419321-3419383)
chr7 (172-252)||(3867466-3867545)
chr7 (175-251)||(11378772-11378847)
chr7 (172-253)||(48161690-48161770)
chr7 (172-212)||(38306611-38306651)
chr7 (188-248)||(43482272-43482331)
[»] chr8 (19 HSPs)
chr8 (172-253)||(12897925-12898006)
chr8 (172-253)||(32065934-32066015)
chr8 (172-253)||(22773972-22774053)
chr8 (193-256)||(9659474-9659537)
chr8 (173-253)||(20138778-20138858)
chr8 (187-253)||(31207011-31207077)
chr8 (172-250)||(35815896-35815974)
chr8 (172-249)||(16457128-16457205)
chr8 (172-256)||(15821023-15821106)
chr8 (171-253)||(9519856-9519938)
chr8 (171-253)||(24995044-24995126)
chr8 (172-249)||(37986508-37986585)
chr8 (172-256)||(13538336-13538420)
chr8 (172-256)||(13686054-13686138)
chr8 (172-252)||(35821606-35821685)
chr8 (220-253)||(34866309-34866342)
chr8 (172-247)||(38577441-38577516)
chr8 (172-253)||(3584088-3584170)
chr8 (172-253)||(36631174-36631254)
[»] scaffold0172 (1 HSPs)
scaffold0172 (172-252)||(19269-19349)
[»] chr5 (9 HSPs)
chr5 (172-256)||(18593593-18593677)
chr5 (172-256)||(18255096-18255180)
chr5 (172-253)||(7452939-7453020)
chr5 (172-256)||(29087829-29087906)
chr5 (188-256)||(7161660-7161728)
chr5 (172-246)||(5656749-5656823)
chr5 (172-253)||(18313303-18313384)
chr5 (172-253)||(34378450-34378531)
chr5 (220-256)||(41250851-41250887)
[»] chr1 (13 HSPs)
chr1 (173-253)||(30685573-30685653)
chr1 (175-253)||(7002541-7002619)
chr1 (172-256)||(24449577-24449660)
chr1 (172-253)||(14320674-14320755)
chr1 (172-253)||(40216155-40216236)
chr1 (172-256)||(5459511-5459590)
chr1 (172-256)||(31584686-31584769)
chr1 (172-246)||(46814121-46814195)
chr1 (172-253)||(6804889-6804969)
chr1 (172-256)||(24684139-24684222)
chr1 (188-256)||(41920824-41920892)
chr1 (220-253)||(24659318-24659351)
chr1 (175-247)||(27031496-27031568)
[»] chr3 (20 HSPs)
chr3 (172-253)||(2392152-2392233)
chr3 (172-253)||(2393915-2393996)
chr3 (172-253)||(45164204-45164285)
chr3 (172-256)||(34475404-34475488)
chr3 (172-256)||(47236049-47236133)
chr3 (172-247)||(40023224-40023299)
chr3 (172-253)||(21343698-21343779)
chr3 (172-253)||(19176857-19176938)
chr3 (172-256)||(50305220-50305304)
chr3 (172-256)||(50559995-50560079)
chr3 (172-246)||(17551308-17551382)
chr3 (175-253)||(23327997-23328075)
chr3 (172-256)||(31483231-31483315)
chr3 (175-251)||(37158660-37158735)
chr3 (174-253)||(53248253-53248332)
chr3 (172-253)||(4463734-4463815)
chr3 (173-231)||(30352110-30352168)
chr3 (172-245)||(9583710-9583783)
chr3 (172-253)||(45399136-45399217)
chr3 (228-256)||(5556986-5557014)
[»] chr6 (5 HSPs)
chr6 (173-253)||(3254309-3254389)
chr6 (172-249)||(3117845-3117922)
chr6 (172-256)||(10542182-10542265)
chr6 (172-256)||(15132486-15132570)
chr6 (172-253)||(15944350-15944431)
[»] chr2 (18 HSPs)
chr2 (172-253)||(14436916-14436997)
chr2 (176-252)||(15457817-15457893)
chr2 (172-256)||(43816093-43816177)
chr2 (173-256)||(3745693-3745776)
chr2 (172-253)||(387527-387608)
chr2 (187-256)||(25280961-25281030)
chr2 (172-256)||(13512485-13512569)
chr2 (172-237)||(17116553-17116618)
chr2 (172-253)||(39338510-39338591)
chr2 (187-256)||(45311450-45311519)
chr2 (172-256)||(5254604-5254687)
chr2 (172-253)||(14106172-14106252)
chr2 (172-256)||(7455603-7455686)
chr2 (173-253)||(10524450-10524529)
chr2 (172-256)||(43248873-43248957)
chr2 (172-247)||(41877207-41877282)
chr2 (187-253)||(7461042-7461107)
chr2 (187-253)||(9823695-9823761)
[»] chr4 (15 HSPs)
chr4 (172-253)||(9750118-9750198)
chr4 (172-256)||(35329358-35329442)
chr4 (187-253)||(30167212-30167278)
chr4 (175-256)||(2826135-2826216)
chr4 (172-253)||(7703038-7703118)
chr4 (173-253)||(27555579-27555660)
chr4 (172-248)||(31050315-31050391)
chr4 (172-253)||(8705789-8705870)
chr4 (187-256)||(30964803-30964872)
chr4 (172-253)||(46698428-46698509)
chr4 (172-256)||(4306056-4306139)
chr4 (172-247)||(35341006-35341083)
chr4 (172-253)||(8255378-8255459)
chr4 (172-253)||(8268796-8268877)
chr4 (172-249)||(49528437-49528514)
[»] scaffold0343 (1 HSPs)
scaffold0343 (172-247)||(6056-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (172-253)||(48686-48767)
[»] scaffold0068 (1 HSPs)
scaffold0068 (201-256)||(35470-35525)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 5860013 - 5859929
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  5860013 gtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccgattcaa 5859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 33434738 - 33434658
Alignment:
Q  2 caccaccaccaccacaacataaaacaacatcgaaaaagtagnnnnnnntatattaccttctggacaccgtgtttacagtgc 82  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  33434738 caccaccaccaccacaacataaaacaacatcgaaaaagtagaaaaaaatatattaccttctggacaccgtgtttacagtgc 33434658  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 33434561 - 33434480
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| | ||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  33434561 gtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 31971865 - 31971781
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||    
T  31971865 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgattcaa 31971781  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 3419124 - 3419048
Alignment:
Q  177 tatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||| ||| ||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||| |||||    
T  3419124 tatgcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgtcgatt 3419048  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 10244530 - 10244612
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||| | |||||| ||||  |||||||||||||||||||||    
T  10244530 tgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 6585237 - 6585318
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| || | ||||||||||||| ||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||    
T  6585237 gtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatatttgctgatt 6585318  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 34391533 - 34391614
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| |  |||||||||||| |||||||||||| ||| |  |||||||||||||||||||||||||||| ||||    
T  34391533 gtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 47325615 - 47325534
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||| | | ||||||||||||| |||||||||||| ||| | || || ||||||||||||||||||||||||||||    
T  47325615 gtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 44353293 - 44353213
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||  ||| | ||||||||||| ||||||||||||||| ||||||    
T  44353293 tctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 44353213  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 40726202 - 40726140
Alignment:
Q  191 tgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| |||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  40726202 tgtatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 37795362 - 37795431
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||    
T  37795362 catttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaa 37795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 37795690 - 37795759
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||    
T  37795690 catttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaa 37795759  T

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Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 42454465 - 42454380
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| | |||||||| |||| |||||| ||| | ||| | |||||||||||| |||||||||||||||| |||||||    
T  42454465 tgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttgctgattcaa 42454380  T

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Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 35745547 - 35745481
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | || ||| |||||||||||||||||||||| ||||    
T  35745547 catttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 25161159 - 25161240
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| ||| | |||||| |||||| ||||| |||||| |  || || |||||||||||||||||||||||||||||||    
T  25161159 gtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 3419383 - 3419321
Alignment:
Q  177 tatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaat 239  Q
    ||||||| ||| ||||||||||| |||||||||||| ||| | ||||||||||| ||||||||    
T  3419383 tatgcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 3867466 - 3867545
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    ||||||||| || | ||||||||||||| |||||| ||||| | | | ||||||| |||| ||||||||||||||||||||    
T  3867466 gtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgcggg-atgaagtttaataatatttgccgat 3867545  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11378847 - 11378772
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccga 251  Q
    ||||||||| | ||| ||||||||  |||||||||||| ||| | |||||||| || ||||||||||||||||||||    
T  11378847 tatatgcggcatcatctgtatctta-ttcgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 48161770 - 48161690
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| |  |||||||| ||| |||||||||| | ||  | |||| |||||||||||||||||||||||| ||||    
T  48161770 gtctatatgcggcactatttgtattttg-ttcgtccatatcttgtgtcttgcagggatgacgtttaataatatttgctgatt 48161690  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 38306611 - 38306651
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccatacc 212  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  38306611 gtctatatgcggcaccatttgtatcttgtttcgtccatacc 38306651  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 43482272 - 43482331
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgc 248  Q
    |||||||||||  |||||||||||| ||| | |  ||||||||||||||||||||||||||    
T  43482272 atttgtatcttatttcgtccataccttgcgtcta-cggggatgacgtttaataatatttgc 43482331  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 12898006 - 12897925
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  12898006 gtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 32066015 - 32065934
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  32066015 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 22773972 - 22774053
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||| | |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||    
T  22773972 gtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 9659474 - 9659537
Alignment:
Q  193 tatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgattcaa 9659537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 20138778 - 20138858
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||  ||| | ||||||||||| ||||||||||||||| ||||||    
T  20138778 tctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 31207077 - 31207011
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | ||||| ||||| ||||||||||||||||||||||    
T  31207077 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 35815974 - 35815896
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccg 250  Q
    ||||||||| || | ||||||||||||| |||||||||||| ||| | ||||| ||||| |||||||||||||||||||    
T  35815974 gtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 16457205 - 16457128
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    ||||||||| || | ||||||||||||| |||||||||||| | | | |||| |||||||||||||||||||||||||    
T  16457205 gtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatatttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 15821106 - 15821023
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| | |||||||||| ||| | |||| || ||||||||||||||||||||| |||||||    
T  15821106 gtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagg-atgacgtttaataatatttgctgattcaa 15821023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 9519856 - 9519938
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||| | |||  ||||||  ||||||||||||||| |||||    
T  9519856 tgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatggtgtttaataatatttgtcgatt 9519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 24995126 - 24995044
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| |||| | ||||||||||||| |||||||||||| ||| | || |||||||| |||| |||||||||||| ||||    
T  24995126 tgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 37986585 - 37986508
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||| | | ||||||||||||| ||||||| | || ||| | ||||||||||||| ||||||||||||||||    
T  37986585 gtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 13538336 - 13538420
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||  |||||||||||| ||| | ||| || |||| ||||||||||||||||| |||||||    
T  13538336 gtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaa 13538420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 13686138 - 13686054
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||  |||||||||||| ||| | ||| || |||| ||||||||||||||||| |||||||    
T  13686138 gtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaa 13686054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 35821606 - 35821685
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||||||| | |||||||||| || ||||||||| || ||| | |||||| |||| |||||||||||||||||||||    
T  35821606 gtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttgccgat 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 34866342 - 34866309
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||||||||||||||||||||||||    
T  34866342 ttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 38577516 - 38577441
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||||||| | ||||||||| ||| ||||| |||||  | ||| ||||||  ||||||||||||||||||||    
T  38577516 gtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatatttg 38577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 3584088 - 3584170
Alignment:
Q  172 gtctatatgcggaaacatttgtatctt-gcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||| | ||||| ||||||  || | ||| ||||||| ||||||||||||||||| ||||    
T  3584088 gtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatggcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36631174 - 36631254
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| ||| | |||||| ||| | |||| |||||| ||| ||||||||||| ||||||    
T  36631174 gtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataataatattttccgatt 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 19269 - 19349
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||||||| | ||||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  19269 gtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 18593593 - 18593677
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||| | ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  18593593 gtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccgattcaa 18593677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 18255180 - 18255096
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| |  |||||||||||| |||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||    
T  18255180 gtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgattcaa 18255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7452939 - 7453020
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||||| ||| | ||||  |||||| |||||||||||||||||||||    
T  7452939 gtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 29087829 - 29087906
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| ||||||||||||       |||| |||||||||||||||||||||| |||||||||    
T  29087829 gtctatatgcggcaccatttgtatcttgtttcgtccatacc-------ttgcagggatgacgtttaataatattttccgattcaa 29087906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 7161728 - 7161660
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||  |||||||||| | ||| | ||| ||||| |||||||||||||||||||||||||||    
T  7161728 atttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaataatatttgccgattcaa 7161660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 5656823 - 5656749
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||||||  ||||| |||||| ||| | |||||| |||| |||||||||||||||    
T  5656823 gtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 18313384 - 18313303
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||| |||||| ||| |||||||| ||| | || | || ||||||||||||||||||| ||||||    
T  18313384 gtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 34378450 - 34378531
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||| |  |||||||| || ||| | |||||| |||| |||||||||||||||| |||||    
T  34378450 gtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatggcgtttaataatatttgtcgatt 34378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 41250887 - 41250851
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41250887 ttgcgaggatgatgtttaataatatttgccgattcaa 41250851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 30685653 - 30685573
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  30685653 tctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 7002541 - 7002619
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | | ||||||||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||    
T  7002541 tatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 24449660 - 24449577
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||||||||||| ||||||    
T  24449660 gtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgc-gggatggcgtttaataatatttgccaattcaa 24449577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 14320674 - 14320755
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||  | ||||||||| | | || ||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  14320674 gtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 40216236 - 40216155
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||| |  || | ||||| ||||||||||||||||||||||| ||||    
T  40216236 gtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 5459511 - 5459590
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| |||||||||||||||| ||| |||||||||     ||||||||||||||||| |||||||    
T  5459511 gtctatatgcggcaccatttgtatgttgcttcgtccataccttgcgtattgcggg-----cgtttaataatatttgctgattcaa 5459590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 31584769 - 31584686
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||| ||||| ||| | ||||| |||||  ||||||||||||||||||||||||    
T  31584769 gtctatatgcggcaccatttgtatcttgtttcgtc-ataccttgcgtcttgcgaggatggtgtttaataatatttgccgattcaa 31584686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 46814195 - 46814121
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||||||| |||||||||||| | | | ||||| ||||| |||||||||||||||    
T  46814195 gtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatattt 46814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 6804889 - 6804969
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||  |||||||||||| ||| | ||||||||||  ||||||||||||||| ||||||    
T  6804889 gtctatatgcggcaccatttgtatcttt-ttcgtccataccttgcgtcttgcggggatagcgtttaataatatttaccgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 24684222 - 24684139
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| || | ||||||||||||| || || |||||| ||||| |||| |||||||| | |||||||||||||||||||||    
T  24684222 gtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatgacatataataatatttgccgattcaa 24684139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 41920824 - 41920892
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||| ||  |||||||||||| | | | |||||| ||||||||||||||||||||| ||||||||    
T  41920824 atttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatatttgtcgattcaa 41920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 24659318 - 24659351
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||||||||||||||||||| ||||    
T  24659318 ttgcggggatgacgtttaataatatttgctgatt 24659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 27031568 - 27031496
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    ||||||||| | ||||| ||| ||| | |||||||| | ||| | ||||| ||||||||||||||||||||||    
T  27031568 tatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 2392233 - 2392152
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| ||||||    
T  2392233 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 2393996 - 2393915
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| ||||||    
T  2393996 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2393915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 45164204 - 45164285
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  45164204 gtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 34475488 - 34475404
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| || | ||||||||||||| ||||| |||||| ||| | ||||||||||||||||||||||||| |||||||||||    
T  34475488 gtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccgattcaa 34475404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 47236049 - 47236133
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | |||| |||||| ||||||||||||||||| |||||||    
T  47236049 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatatttgctgattcaa 47236133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 40023299 - 40023224
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||||||| | ||||||||||||| ||||||||||| |||| | |||||||||||| |||||||||||||||    
T  40023299 gtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatttg 40023224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 21343698 - 21343779
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||  | |||| ||||||||||||||||||||||| |||||    
T  21343698 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcgatt 21343779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 19176857 - 19176938
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||| || |||||||||||  ||| | |||| || ||||||||||||||||||||||||||    
T  19176857 gtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 50305304 - 50305220
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||  | ||||||||||||| | |||||||||| ||| | ||||||| ||| ||||||||||||||||| |||||||    
T  50305304 gtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgattcaa 50305220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 50559995 - 50560079
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||| ||||| | | ||||||||||| |||||||||| | ||| ||||||| ||||||||||||||||||||||  |||||||    
T  50559995 gtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttgttgattcaa 50560079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 17551308 - 17551382
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||| ||| ||||| |||||| ||||| |||| ||||| ||||||||||||||||    
T  17551308 gtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatattt 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 23328075 - 23327997
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | ||||| ||||||| |||||||||||| ||| |||||| |||||  ||||||||||||||||| ||||    
T  23328075 tatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatagcgtttaataatatttgctgatt 23327997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 31483231 - 31483315
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| || || |||||| ||| | ||| |||||||  ||||||||||||||||||||||||    
T  31483231 gtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatggtgtttaataatatttgccgattcaa 31483315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 37158660 - 37158735
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccga 251  Q
    ||||||||| | |||||||||| || |||||||||||| ||| | ||||||||||| ||||| ||||||||||||||    
T  37158660 tatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 53248253 - 53248332
Alignment:
Q  174 ctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||  | ||||||||||||| || ||||||||| | |   |||||||||||||||||||||||||||| |||||    
T  53248253 ctatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatttgtcgatt 53248332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 4463815 - 4463734
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||| | ||| |||||||||  | ||| | ||| |||| |||||||||||||||||||||||||    
T  4463815 gtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 30352168 - 30352110
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatga 231  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||| ||||    
T  30352168 tctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgggaatga 30352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 9583783 - 9583710
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatt 245  Q
    |||||||||||| | ||||||||||||| |||||| ||||| ||  | || ||| |||| ||||||||||||||    
T  9583783 gtctatatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatatt 9583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 45399136 - 45399217
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | | ||||||||||| ||||| ||||||  || | || ||| |||| ||||||||||||||||| ||||    
T  45399136 gtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcgtttaataatatttgctgatt 45399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 5556986 - 5557014
Alignment:
Q  228 atgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||||||||||||||||||||    
T  5556986 atgacgtttaataatatttgccgattcaa 5557014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 3254309 - 3254389
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||| ||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  3254309 tctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 3117845 - 3117922
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||| | | ||||||||||||  |||||||||||| | | | |||| || ||||||||||||||||||||||    
T  3117845 gtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatttgcc 3117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 10542182 - 10542265
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | | ||||||||||| ||||| |||| | ||||| |||| |||||| || |||||||||||| |||||||||    
T  10542182 gtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgc-gggatggcgcttaataatattttccgattcaa 10542265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 15132570 - 15132486
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||| ||| | ||||||||||||| || ||||||||| | | | |||||  |||| ||||||||||||||||| |||||||    
T  15132570 gtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgattcaa 15132486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 15944350 - 15944431
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttc-gtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||  | |||||||||||| |||| ||||||||| ||| | || | |||||| ||||||||||||||||||||||    
T  15944350 gtctatatgcgacaccatttgtatctt-cttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 14436997 - 14436916
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||    
T  14436997 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  176 atatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||| | ||||||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 43816177 - 43816093
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||  ||| |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||    
T  43816177 gtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgattcaa 43816093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 3745693 - 3745776
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| | | ||||||||||||| |||||||||||| ||| | ||  ||||||||| |||||||||||||||||||||||    
T  3745693 tctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgattcaa 3745776  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 387527 - 387608
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| |||   |||||| |||||||||||||||||| || |||||    
T  387527 gtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatgacgtttaataatatctgtcgatt 387608  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 25281030 - 25280961
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||| ||||||| |||||||||||| ||| | ||| ||||||||||||||||||||||| |||||||||    
T  25281030 catttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgattcaa 25280961  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 13512569 - 13512485
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||| |||||||||||  ||| | ||||||| |||||||||||||||||||  ||||||||    
T  13512569 gtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatatttttcgattcaa 13512485  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 17116618 - 17116553
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgttta 237  Q
    |||||||||||| | |||||||||||||  ||||||||||| ||| | ||||||||||||||||||    
T  17116618 gtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 39338591 - 39338510
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||  ||| | || ||  |||| ||||||||||||||||||||||    
T  39338591 gtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 45311519 - 45311450
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| ||||||| | || ||||| |||||||| || |||||||||||||| ||||||||||    
T  45311519 catttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaa 45311450  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 5254604 - 5254687
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | |||||||||||   |||||||||||| | | | ||||| ||||||||||||||||||||||| |||||||    
T  5254604 gtctatatgcggcaccatttgtatctat-ttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgattcaa 5254687  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 14106252 - 14106172
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||| ||||||| |||||| ||||| ||| | ||||| ||||| ||||||||||||||||| ||||    
T  14106252 gtctatatgcggcaccatttctatcttgtttcgtc-ataccctgcgtcttgcgaggatggcgtttaataatatttgctgatt 14106172  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 7455603 - 7455686
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||| ||||| | ||||||||||||  ||||| |||||| ||| | ||||||||||||||||||||| ||||| | |||||||    
T  7455603 gtctatttgcggcaccatttgtatcttatttcgttcatacc-tgcgtcttgcggggatgacgtttaatattatttactgattcaa 7455686  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 10524450 - 10524529
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | | ||||||||| ||| |||||||||||| ||| | |||| ||| || ||||||||||||||||||||||    
T  10524450 tctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgcaggg-tggcgtttaataatatttgccgatt 10524529  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 43248957 - 43248873
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||   ||||| ||||||| |||||||||||| ||  | ||| | ||||||||||||||||||||||  |||||||    
T  43248957 gtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttgatgattcaa 43248873  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 41877282 - 41877207
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||| ||| | ||||||||| ||| |||||||||| | ||| | |||||||||||  |||||||||||||||    
T  41877282 gtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatggagtttaataatatttg 41877207  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 7461042 - 7461107
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| ||| |||||| ||||  ||| | ||||||||||||||||||||||||||||| ||||    
T  7461042 catttgtattttgtttcgtc-atactctgcgtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| ||| | |||||| ||  | |||||| |||| ||||||||||||||||||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 9750118 - 9750198
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||||||||| |||||    
T  9750118 gtctatatgcggcaccatttgtatcttgtttcgtccaaacc-tgcgtcttgcggggatgacgtttaataatatttgtcgatt 9750198  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 35329358 - 35329442
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| |||||||||||| | | | ||||||||||| |||||| ||||||||||||||||||    
T  35329358 gtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccgattcaa 35329442  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 30167278 - 30167212
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  30167278 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 2826135 - 2826216
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| | ||||||||||||| | |||||||||| ||| | |||| | |||||||||||||||||||||| |||||||    
T  2826135 tatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgctgattcaa 2826216  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7703038 - 7703118
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||  ||| |||||||| ||  | ||||||||||||||||||||||||||||||||||    
T  7703038 gtctatatgcggcaccatttgtatcttt-ttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 27555660 - 27555579
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgc-ggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| |  |||||||||||| |||||||||||| ||| | |||| ||||||| ||||||||||||||||||||||    
T  27555660 tctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgccgatt 27555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 31050391 - 31050315
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgc 248  Q
    |||||||||||  | ||||||||||||| |||||||||||   |||| ||||||||| |||||||||||||||||||    
T  31050391 gtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatttgc 31050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 8705870 - 8705789
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||| | | |||||||||| ||| |||||||||||  || | |||  |||||||||||||||||||||||||||||    
T  8705870 gtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 30964803 - 30964872
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | |||| ||||||  ||||||||||||||| ||||||||    
T  30964803 catttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatatttgtcgattcaa 30964872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 46698509 - 46698428
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||| ||||||| ||| | || |  ||||||||||||||||||||||| ||||    
T  46698509 gtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 4306056 - 4306139
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||| ||||||  ||||| |||||| ||| | || |||||||||| |||||||||||||||||||||||    
T  4306056 gtctatatgcggcaccatttatatcttt-ttcgttcataccttgcgtcttccggggatgacatttaataatatttgccgattcaa 4306139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 35341083 - 35341006
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcgggg--atgacgtttaataatatttg 247  Q
    ||||||||| || | ||||||||||||| |||||||||||  ||| | ||||||||  ||||||||||||||||||||    
T  35341083 gtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 8255378 - 8255459
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||||  ||||||| ||| |  || |||||| |||  ||||||||||||||||||||||    
T  8255378 gtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8255459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 8268796 - 8268877
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||||  ||||||| ||| |  || |||||| |||  ||||||||||||||||||||||    
T  8268796 gtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8268877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 49528437 - 49528514
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||||| | ||||||||||||| |||||||||||| |   | |||||||| ||  ||||||| |||||||||    
T  49528437 gtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatgatatttgcc 49528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 6056 - 6131
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||| ||| | |||||||||||||  |||| |||| | ||| | ||||||||||||||||||||||||||||    
T  6056 gtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaataatatttg 6131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 48686 - 48767
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||| | ||  | ||||||||| |||||| |||||||||||| ||||    
T  48686 gtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatatttgcggatt 48767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 35525 - 35470
Alignment:
Q  201 ttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | | | || ||||||||||||| ||||||||||||||||||||    
T  35525 ttcgtccataccttacgtcttacggggatgacgttcaataatatttgccgattcaa 35470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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