View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5664_low_1 (Length: 490)
Name: NF5664_low_1
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5664_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 2765530 - 2765066
Alignment:
| Q |
9 |
gaagaatatggaagtgggtgtaggttttgatgagaacgattacttgtcatgttgtggaagcaccaaattcgccaaggaaatggctgctgcctctcctttc |
108 |
Q |
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| T |
2765530 |
gaagaaaatggaagtgggtgtaggttttgatgagaacgattacttgtcatgttgtggaagcaccaaattcgccaaggaaatggctgctgcctctcctttc |
2765431 |
T |
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| Q |
109 |
ccttcctaccaccgtgctctcaccgttgctaaacacatttggttcaacatagttgatgtcaatggttggcttcaagctttctctgcccatccttccattg |
208 |
Q |
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| T |
2765430 |
ccttcctaccaccgtgctctcaccgttgctaaacacatttggttcaacatagttgatgtcaatggttggcttcaagctttctctgcccatccttccattg |
2765331 |
T |
|
| Q |
209 |
gtcaacctcgtcctccttctcatgcttctgcaacaagtgctgagttcagttttcattctctaactcaaactctcctttttcatctgggtctctttctttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2765330 |
gtcaacctcgtcctccttctcatgcttctgcaacaagtgctgagttcagttttcattctctaactcaaactctcctttttcatctgggtctctttctttt |
2765231 |
T |
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| Q |
309 |
ttgcttattaatgtgaaaatttgttactttagtgtgaaggtcgtgtttttcttatgtgggtctctctcatttatgtttattgatgtgaaaaattgtgact |
408 |
Q |
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| T |
2765230 |
ttgcttattaatgtgaaaaattgttactttagtgtgaaggtcgtgtttttcttatgtgggtctctctcatttatgtttattgatgtgaaaaattgtgact |
2765131 |
T |
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| Q |
409 |
ttaatgctaaggttgtgtttttcttatctgggtctctttcctttttgtatattgatatgaaaaat |
473 |
Q |
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| T |
2765130 |
ttaatgctaaggttgtgtttttcttatctgggtctctttcctttttgtatattgatatgaaaaat |
2765066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 432
Target Start/End: Complemental strand, 2765174 - 2765035
Alignment:
| Q |
293 |
tgggtctctttcttttttgcttattaatgtgaaaatttgttactttagtgtgaaggtcgtgtttttcttatgtgggtctctctcatttatgtttattgat |
392 |
Q |
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||||||||| || ||| || ||||| ||||||||| |||| |||||| || ||||| ||||||||||||| ||||||||| || ||| ||| ||||||| |
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| T |
2765174 |
tgggtctctctcatttatgtttattgatgtgaaaaattgtgactttaatgctaaggttgtgtttttcttatctgggtctctttcctttttgtatattgat |
2765075 |
T |
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| Q |
393 |
gtgaaaaattgtgactttaatgctaaggttgtgtttttct |
432 |
Q |
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|||||||||||| |||| || |||||||||||||||| |
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| T |
2765074 |
atgaaaaattgtgtctttcgtgtaaaggttgtgtttttct |
2765035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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