View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5664_low_5 (Length: 256)

Name: NF5664_low_5
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5664_low_5
NF5664_low_5
[»] chr7 (22 HSPs)
chr7 (172-256)||(5859929-5860013)
chr7 (2-82)||(33434658-33434738)
chr7 (172-253)||(33434480-33434561)
chr7 (172-256)||(31971781-31971865)
chr7 (177-253)||(3419048-3419124)
chr7 (171-253)||(10244530-10244612)
chr7 (172-253)||(6585237-6585318)
chr7 (172-253)||(34391533-34391614)
chr7 (172-253)||(47325534-47325615)
chr7 (173-253)||(44353213-44353293)
chr7 (191-253)||(40726140-40726202)
chr7 (187-256)||(37795362-37795431)
chr7 (187-256)||(37795690-37795759)
chr7 (171-256)||(42454380-42454465)
chr7 (187-253)||(35745481-35745547)
chr7 (172-253)||(25161159-25161240)
chr7 (177-239)||(3419321-3419383)
chr7 (172-252)||(3867466-3867545)
chr7 (175-251)||(11378772-11378847)
chr7 (172-253)||(48161690-48161770)
chr7 (172-212)||(38306611-38306651)
chr7 (188-248)||(43482272-43482331)
[»] chr8 (19 HSPs)
chr8 (172-253)||(12897925-12898006)
chr8 (172-253)||(32065934-32066015)
chr8 (172-253)||(22773972-22774053)
chr8 (193-256)||(9659474-9659537)
chr8 (173-253)||(20138778-20138858)
chr8 (187-253)||(31207011-31207077)
chr8 (172-250)||(35815896-35815974)
chr8 (172-249)||(16457128-16457205)
chr8 (172-256)||(15821023-15821106)
chr8 (171-253)||(9519856-9519938)
chr8 (171-253)||(24995044-24995126)
chr8 (172-249)||(37986508-37986585)
chr8 (172-256)||(13538336-13538420)
chr8 (172-256)||(13686054-13686138)
chr8 (172-252)||(35821606-35821685)
chr8 (220-253)||(34866309-34866342)
chr8 (172-247)||(38577441-38577516)
chr8 (172-253)||(3584088-3584170)
chr8 (172-253)||(36631174-36631254)
[»] scaffold0172 (1 HSPs)
scaffold0172 (172-252)||(19269-19349)
[»] chr5 (9 HSPs)
chr5 (172-256)||(18593593-18593677)
chr5 (172-256)||(18255096-18255180)
chr5 (172-253)||(7452939-7453020)
chr5 (172-256)||(29087829-29087906)
chr5 (188-256)||(7161660-7161728)
chr5 (172-246)||(5656749-5656823)
chr5 (172-253)||(18313303-18313384)
chr5 (172-253)||(34378450-34378531)
chr5 (220-256)||(41250851-41250887)
[»] chr1 (13 HSPs)
chr1 (173-253)||(30685573-30685653)
chr1 (175-253)||(7002541-7002619)
chr1 (172-256)||(24449577-24449660)
chr1 (172-253)||(14320674-14320755)
chr1 (172-253)||(40216155-40216236)
chr1 (172-256)||(5459511-5459590)
chr1 (172-256)||(31584686-31584769)
chr1 (172-246)||(46814121-46814195)
chr1 (172-253)||(6804889-6804969)
chr1 (172-256)||(24684139-24684222)
chr1 (188-256)||(41920824-41920892)
chr1 (220-253)||(24659318-24659351)
chr1 (175-247)||(27031496-27031568)
[»] chr3 (20 HSPs)
chr3 (172-253)||(2392152-2392233)
chr3 (172-253)||(2393915-2393996)
chr3 (172-253)||(45164204-45164285)
chr3 (172-256)||(34475404-34475488)
chr3 (172-256)||(47236049-47236133)
chr3 (172-247)||(40023224-40023299)
chr3 (172-253)||(21343698-21343779)
chr3 (172-253)||(19176857-19176938)
chr3 (172-256)||(50305220-50305304)
chr3 (172-256)||(50559995-50560079)
chr3 (172-246)||(17551308-17551382)
chr3 (175-253)||(23327997-23328075)
chr3 (172-256)||(31483231-31483315)
chr3 (175-251)||(37158660-37158735)
chr3 (174-253)||(53248253-53248332)
chr3 (172-253)||(4463734-4463815)
chr3 (173-231)||(30352110-30352168)
chr3 (172-245)||(9583710-9583783)
chr3 (172-253)||(45399136-45399217)
chr3 (228-256)||(5556986-5557014)
[»] chr6 (5 HSPs)
chr6 (173-253)||(3254309-3254389)
chr6 (172-249)||(3117845-3117922)
chr6 (172-256)||(10542182-10542265)
chr6 (172-256)||(15132486-15132570)
chr6 (172-253)||(15944350-15944431)
[»] chr2 (18 HSPs)
chr2 (172-253)||(14436916-14436997)
chr2 (176-252)||(15457817-15457893)
chr2 (172-256)||(43816093-43816177)
chr2 (173-256)||(3745693-3745776)
chr2 (172-253)||(387527-387608)
chr2 (187-256)||(25280961-25281030)
chr2 (172-256)||(13512485-13512569)
chr2 (172-237)||(17116553-17116618)
chr2 (172-253)||(39338510-39338591)
chr2 (187-256)||(45311450-45311519)
chr2 (172-256)||(5254604-5254687)
chr2 (172-253)||(14106172-14106252)
chr2 (172-256)||(7455603-7455686)
chr2 (173-253)||(10524450-10524529)
chr2 (172-256)||(43248873-43248957)
chr2 (172-247)||(41877207-41877282)
chr2 (187-253)||(7461042-7461107)
chr2 (187-253)||(9823695-9823761)
[»] chr4 (15 HSPs)
chr4 (172-253)||(9750118-9750198)
chr4 (172-256)||(35329358-35329442)
chr4 (187-253)||(30167212-30167278)
chr4 (175-256)||(2826135-2826216)
chr4 (172-253)||(7703038-7703118)
chr4 (173-253)||(27555579-27555660)
chr4 (172-248)||(31050315-31050391)
chr4 (172-253)||(8705789-8705870)
chr4 (187-256)||(30964803-30964872)
chr4 (172-253)||(46698428-46698509)
chr4 (172-256)||(4306056-4306139)
chr4 (172-247)||(35341006-35341083)
chr4 (172-253)||(8255378-8255459)
chr4 (172-253)||(8268796-8268877)
chr4 (172-249)||(49528437-49528514)
[»] scaffold0343 (1 HSPs)
scaffold0343 (172-247)||(6056-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (172-253)||(48686-48767)
[»] scaffold0068 (1 HSPs)
scaffold0068 (201-256)||(35470-35525)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 5860013 - 5859929
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  5860013 gtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccgattcaa 5859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 33434738 - 33434658
Alignment:
Q  2 caccaccaccaccacaacataaaacaacatcgaaaaagtagnnnnnnntatattaccttctggacaccgtgtttacagtgc 82  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  33434738 caccaccaccaccacaacataaaacaacatcgaaaaagtagaaaaaaatatattaccttctggacaccgtgtttacagtgc 33434658  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 33434561 - 33434480
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| | ||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  33434561 gtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 31971865 - 31971781
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||    
T  31971865 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgattcaa 31971781  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 3419124 - 3419048
Alignment:
Q  177 tatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||| ||| ||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||| |||||    
T  3419124 tatgcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgtcgatt 3419048  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 10244530 - 10244612
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||| | |||||| ||||  |||||||||||||||||||||    
T  10244530 tgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 6585237 - 6585318
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| || | ||||||||||||| ||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||    
T  6585237 gtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatatttgctgatt 6585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 34391533 - 34391614
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| |  |||||||||||| |||||||||||| ||| |  |||||||||||||||||||||||||||| ||||    
T  34391533 gtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 47325615 - 47325534
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||| | | ||||||||||||| |||||||||||| ||| | || || ||||||||||||||||||||||||||||    
T  47325615 gtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 44353293 - 44353213
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||  ||| | ||||||||||| ||||||||||||||| ||||||    
T  44353293 tctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 44353213  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 40726202 - 40726140
Alignment:
Q  191 tgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| |||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  40726202 tgtatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 37795362 - 37795431
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||    
T  37795362 catttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaa 37795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 37795690 - 37795759
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||    
T  37795690 catttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccgactcaa 37795759  T

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Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 42454465 - 42454380
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| | |||||||| |||| |||||| ||| | ||| | |||||||||||| |||||||||||||||| |||||||    
T  42454465 tgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttgctgattcaa 42454380  T

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Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 35745547 - 35745481
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | || ||| |||||||||||||||||||||| ||||    
T  35745547 catttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 25161159 - 25161240
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| ||| | |||||| |||||| ||||| |||||| |  || || |||||||||||||||||||||||||||||||    
T  25161159 gtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 3419383 - 3419321
Alignment:
Q  177 tatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaat 239  Q
    ||||||| ||| ||||||||||| |||||||||||| ||| | ||||||||||| ||||||||    
T  3419383 tatgcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 3867466 - 3867545
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    ||||||||| || | ||||||||||||| |||||| ||||| | | | ||||||| |||| ||||||||||||||||||||    
T  3867466 gtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgcggg-atgaagtttaataatatttgccgat 3867545  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11378847 - 11378772
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccga 251  Q
    ||||||||| | ||| ||||||||  |||||||||||| ||| | |||||||| || ||||||||||||||||||||    
T  11378847 tatatgcggcatcatctgtatctta-ttcgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 48161770 - 48161690
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| |  |||||||| ||| |||||||||| | ||  | |||| |||||||||||||||||||||||| ||||    
T  48161770 gtctatatgcggcactatttgtattttg-ttcgtccatatcttgtgtcttgcagggatgacgtttaataatatttgctgatt 48161690  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 38306611 - 38306651
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccatacc 212  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  38306611 gtctatatgcggcaccatttgtatcttgtttcgtccatacc 38306651  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 43482272 - 43482331
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgc 248  Q
    |||||||||||  |||||||||||| ||| | |  ||||||||||||||||||||||||||    
T  43482272 atttgtatcttatttcgtccataccttgcgtcta-cggggatgacgtttaataatatttgc 43482331  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 12898006 - 12897925
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  12898006 gtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 32066015 - 32065934
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  32066015 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 22773972 - 22774053
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||| | |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||    
T  22773972 gtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 9659474 - 9659537
Alignment:
Q  193 tatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgattcaa 9659537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 20138778 - 20138858
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||  ||| | ||||||||||| ||||||||||||||| ||||||    
T  20138778 tctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 31207077 - 31207011
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | ||||| ||||| ||||||||||||||||||||||    
T  31207077 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 35815974 - 35815896
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccg 250  Q
    ||||||||| || | ||||||||||||| |||||||||||| ||| | ||||| ||||| |||||||||||||||||||    
T  35815974 gtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 16457205 - 16457128
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    ||||||||| || | ||||||||||||| |||||||||||| | | | |||| |||||||||||||||||||||||||    
T  16457205 gtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatatttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 15821106 - 15821023
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| | |||||||||| ||| | |||| || ||||||||||||||||||||| |||||||    
T  15821106 gtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagg-atgacgtttaataatatttgctgattcaa 15821023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 9519856 - 9519938
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||| | |||  ||||||  ||||||||||||||| |||||    
T  9519856 tgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatggtgtttaataatatttgtcgatt 9519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 24995126 - 24995044
Alignment:
Q  171 tgtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||| |||| | ||||||||||||| |||||||||||| ||| | || |||||||| |||| |||||||||||| ||||    
T  24995126 tgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 37986585 - 37986508
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||| | | ||||||||||||| ||||||| | || ||| | ||||||||||||| ||||||||||||||||    
T  37986585 gtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 13538336 - 13538420
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||  |||||||||||| ||| | ||| || |||| ||||||||||||||||| |||||||    
T  13538336 gtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaa 13538420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 13686138 - 13686054
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||  |||||||||||| ||| | ||| || |||| ||||||||||||||||| |||||||    
T  13686138 gtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattcaa 13686054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 35821606 - 35821685
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||||||| | |||||||||| || ||||||||| || ||| | |||||| |||| |||||||||||||||||||||    
T  35821606 gtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttgccgat 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 34866342 - 34866309
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||||||||||||||||||||||||    
T  34866342 ttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 38577516 - 38577441
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||||||| | ||||||||| ||| ||||| |||||  | ||| ||||||  ||||||||||||||||||||    
T  38577516 gtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatatttg 38577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 3584088 - 3584170
Alignment:
Q  172 gtctatatgcggaaacatttgtatctt-gcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||| | ||||| ||||||  || | ||| ||||||| ||||||||||||||||| ||||    
T  3584088 gtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatggcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36631174 - 36631254
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| ||| | |||||| ||| | |||| |||||| ||| ||||||||||| ||||||    
T  36631174 gtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataataatattttccgatt 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 19269 - 19349
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||||||| | ||||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  19269 gtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 18593593 - 18593677
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||| | ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  18593593 gtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccgattcaa 18593677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 18255180 - 18255096
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| |  |||||||||||| |||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||    
T  18255180 gtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgattcaa 18255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7452939 - 7453020
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||||| ||| | ||||  |||||| |||||||||||||||||||||    
T  7452939 gtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 29087829 - 29087906
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| ||||||||||||       |||| |||||||||||||||||||||| |||||||||    
T  29087829 gtctatatgcggcaccatttgtatcttgtttcgtccatacc-------ttgcagggatgacgtttaataatattttccgattcaa 29087906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 7161728 - 7161660
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||  |||||||||| | ||| | ||| ||||| |||||||||||||||||||||||||||    
T  7161728 atttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaataatatttgccgattcaa 7161660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 5656823 - 5656749
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||||||  ||||| |||||| ||| | |||||| |||| |||||||||||||||    
T  5656823 gtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 18313384 - 18313303
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||| |||||| ||| |||||||| ||| | || | || ||||||||||||||||||| ||||||    
T  18313384 gtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 34378450 - 34378531
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||| |  |||||||| || ||| | |||||| |||| |||||||||||||||| |||||    
T  34378450 gtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatggcgtttaataatatttgtcgatt 34378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 41250887 - 41250851
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41250887 ttgcgaggatgatgtttaataatatttgccgattcaa 41250851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 30685653 - 30685573
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  30685653 tctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 7002541 - 7002619
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | | ||||||||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||    
T  7002541 tatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 24449660 - 24449577
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||||||||||| ||||||    
T  24449660 gtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgc-gggatggcgtttaataatatttgccaattcaa 24449577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 14320674 - 14320755
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||  | ||||||||| | | || ||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  14320674 gtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 40216236 - 40216155
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||| |  || | ||||| ||||||||||||||||||||||| ||||    
T  40216236 gtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 5459511 - 5459590
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| |||||||||||||||| ||| |||||||||     ||||||||||||||||| |||||||    
T  5459511 gtctatatgcggcaccatttgtatgttgcttcgtccataccttgcgtattgcggg-----cgtttaataatatttgctgattcaa 5459590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 31584769 - 31584686
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||| ||||| ||| | ||||| |||||  ||||||||||||||||||||||||    
T  31584769 gtctatatgcggcaccatttgtatcttgtttcgtc-ataccttgcgtcttgcgaggatggtgtttaataatatttgccgattcaa 31584686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 46814195 - 46814121
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||||||| |||||||||||| | | | ||||| ||||| |||||||||||||||    
T  46814195 gtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatattt 46814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 6804889 - 6804969
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||  |||||||||||| ||| | ||||||||||  ||||||||||||||| ||||||    
T  6804889 gtctatatgcggcaccatttgtatcttt-ttcgtccataccttgcgtcttgcggggatagcgtttaataatatttaccgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 24684222 - 24684139
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| || | ||||||||||||| || || |||||| ||||| |||| |||||||| | |||||||||||||||||||||    
T  24684222 gtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatgacatataataatatttgccgattcaa 24684139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 41920824 - 41920892
Alignment:
Q  188 atttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||| ||  |||||||||||| | | | |||||| ||||||||||||||||||||| ||||||||    
T  41920824 atttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatatttgtcgattcaa 41920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 24659318 - 24659351
Alignment:
Q  220 ttgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||||||||||||||||||| ||||    
T  24659318 ttgcggggatgacgtttaataatatttgctgatt 24659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 27031568 - 27031496
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    ||||||||| | ||||| ||| ||| | |||||||| | ||| | ||||| ||||||||||||||||||||||    
T  27031568 tatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 2392233 - 2392152
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| ||||||    
T  2392233 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 2393996 - 2393915
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| ||||||    
T  2393996 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2393915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 45164204 - 45164285
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  45164204 gtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 34475488 - 34475404
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| || | ||||||||||||| ||||| |||||| ||| | ||||||||||||||||||||||||| |||||||||||    
T  34475488 gtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccgattcaa 34475404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 47236049 - 47236133
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | |||| |||||| ||||||||||||||||| |||||||    
T  47236049 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatatttgctgattcaa 47236133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 40023299 - 40023224
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||||||| | ||||||||||||| ||||||||||| |||| | |||||||||||| |||||||||||||||    
T  40023299 gtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatttg 40023224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 21343698 - 21343779
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||  | |||| ||||||||||||||||||||||| |||||    
T  21343698 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcgatt 21343779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 19176857 - 19176938
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||| || |||||||||||  ||| | |||| || ||||||||||||||||||||||||||    
T  19176857 gtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 50305304 - 50305220
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||  | ||||||||||||| | |||||||||| ||| | ||||||| ||| ||||||||||||||||| |||||||    
T  50305304 gtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgattcaa 50305220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 50559995 - 50560079
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||| ||||| | | ||||||||||| |||||||||| | ||| ||||||| ||||||||||||||||||||||  |||||||    
T  50559995 gtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttgttgattcaa 50560079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 17551308 - 17551382
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatattt 246  Q
    |||||||||||| | ||||||||| ||| ||||| |||||| ||||| |||| ||||| ||||||||||||||||    
T  17551308 gtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatattt 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 23328075 - 23327997
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | ||||| ||||||| |||||||||||| ||| |||||| |||||  ||||||||||||||||| ||||    
T  23328075 tatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatagcgtttaataatatttgctgatt 23327997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 31483231 - 31483315
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| || || |||||| ||| | ||| |||||||  ||||||||||||||||||||||||    
T  31483231 gtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatggtgtttaataatatttgccgattcaa 31483315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 37158660 - 37158735
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccga 251  Q
    ||||||||| | |||||||||| || |||||||||||| ||| | ||||||||||| ||||| ||||||||||||||    
T  37158660 tatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 53248253 - 53248332
Alignment:
Q  174 ctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||  | ||||||||||||| || ||||||||| | |   |||||||||||||||||||||||||||| |||||    
T  53248253 ctatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatttgtcgatt 53248332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 4463815 - 4463734
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||| | ||| |||||||||  | ||| | ||| |||| |||||||||||||||||||||||||    
T  4463815 gtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 30352168 - 30352110
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatga 231  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||| ||||    
T  30352168 tctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgggaatga 30352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 9583783 - 9583710
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatt 245  Q
    |||||||||||| | ||||||||||||| |||||| ||||| ||  | || ||| |||| ||||||||||||||    
T  9583783 gtctatatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatatt 9583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 45399136 - 45399217
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | | ||||||||||| ||||| ||||||  || | || ||| |||| ||||||||||||||||| ||||    
T  45399136 gtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcgtttaataatatttgctgatt 45399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 5556986 - 5557014
Alignment:
Q  228 atgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||||||||||||||||||||    
T  5556986 atgacgtttaataatatttgccgattcaa 5557014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 3254309 - 3254389
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||| ||| | ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  3254309 tctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 3117845 - 3117922
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||| | | ||||||||||||  |||||||||||| | | | |||| || ||||||||||||||||||||||    
T  3117845 gtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatttgcc 3117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 10542182 - 10542265
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | | ||||||||||| ||||| |||| | ||||| |||| |||||| || |||||||||||| |||||||||    
T  10542182 gtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgc-gggatggcgcttaataatattttccgattcaa 10542265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 15132570 - 15132486
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||| ||| | ||||||||||||| || ||||||||| | | | |||||  |||| ||||||||||||||||| |||||||    
T  15132570 gtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgattcaa 15132486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 15944350 - 15944431
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttc-gtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||  | |||||||||||| |||| ||||||||| ||| | || | |||||| ||||||||||||||||||||||    
T  15944350 gtctatatgcgacaccatttgtatctt-cttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 14436997 - 14436916
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||    
T  14436997 gtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  176 atatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgat 252  Q
    |||||||| | ||||||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 43816177 - 43816093
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||  ||| |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||    
T  43816177 gtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgattcaa 43816093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 3745693 - 3745776
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| | | ||||||||||||| |||||||||||| ||| | ||  ||||||||| |||||||||||||||||||||||    
T  3745693 tctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgattcaa 3745776  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 387527 - 387608
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||| |||   |||||| |||||||||||||||||| || |||||    
T  387527 gtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatgacgtttaataatatctgtcgatt 387608  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 25281030 - 25280961
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||| ||||||| |||||||||||| ||| | ||| ||||||||||||||||||||||| |||||||||    
T  25281030 catttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgattcaa 25280961  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 13512569 - 13512485
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||||||| ||| |||||||||||  ||| | ||||||| |||||||||||||||||||  ||||||||    
T  13512569 gtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatatttttcgattcaa 13512485  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 17116618 - 17116553
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgttta 237  Q
    |||||||||||| | |||||||||||||  ||||||||||| ||| | ||||||||||||||||||    
T  17116618 gtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 39338591 - 39338510
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||||||  ||| | || ||  |||| ||||||||||||||||||||||    
T  39338591 gtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 45311519 - 45311450
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| ||||||| | || ||||| |||||||| || |||||||||||||| ||||||||||    
T  45311519 catttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattcaa 45311450  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 5254604 - 5254687
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | |||||||||||   |||||||||||| | | | ||||| ||||||||||||||||||||||| |||||||    
T  5254604 gtctatatgcggcaccatttgtatctat-ttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgattcaa 5254687  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 14106252 - 14106172
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||| ||||||| |||||| ||||| ||| | ||||| ||||| ||||||||||||||||| ||||    
T  14106252 gtctatatgcggcaccatttctatcttgtttcgtc-ataccctgcgtcttgcgaggatggcgtttaataatatttgctgatt 14106172  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 7455603 - 7455686
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||| ||||| | ||||||||||||  ||||| |||||| ||| | ||||||||||||||||||||| ||||| | |||||||    
T  7455603 gtctatttgcggcaccatttgtatcttatttcgttcatacc-tgcgtcttgcggggatgacgtttaatattatttactgattcaa 7455686  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 10524450 - 10524529
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| | | ||||||||| ||| |||||||||||| ||| | |||| ||| || ||||||||||||||||||||||    
T  10524450 tctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgcaggg-tggcgtttaataatatttgccgatt 10524529  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 43248957 - 43248873
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||   ||||| ||||||| |||||||||||| ||  | ||| | ||||||||||||||||||||||  |||||||    
T  43248957 gtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttgatgattcaa 43248873  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 41877282 - 41877207
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||| ||| | ||||||||| ||| |||||||||| | ||| | |||||||||||  |||||||||||||||    
T  41877282 gtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatggagtttaataatatttg 41877207  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 7461042 - 7461107
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||| ||| |||||| ||||  ||| | ||||||||||||||||||||||||||||| ||||    
T  7461042 catttgtattttgtttcgtc-atactctgcgtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| ||| | |||||| ||  | |||||| |||| ||||||||||||||||||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 9750118 - 9750198
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||||||||| |||||    
T  9750118 gtctatatgcggcaccatttgtatcttgtttcgtccaaacc-tgcgtcttgcggggatgacgtttaataatatttgtcgatt 9750198  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 35329358 - 35329442
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||| | | ||||||||||||| |||||||||||| | | | ||||||||||| |||||| ||||||||||||||||||    
T  35329358 gtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccgattcaa 35329442  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 30167278 - 30167212
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||||| |||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  30167278 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 2826135 - 2826216
Alignment:
Q  175 tatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||| | ||||||||||||| | |||||||||| ||| | |||| | |||||||||||||||||||||| |||||||    
T  2826135 tatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgctgattcaa 2826216  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7703038 - 7703118
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||  ||| |||||||| ||  | ||||||||||||||||||||||||||||||||||    
T  7703038 gtctatatgcggcaccatttgtatcttt-ttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 27555660 - 27555579
Alignment:
Q  173 tctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgc-ggggatgacgtttaataatatttgccgatt 253  Q
    ||||||||||| |  |||||||||||| |||||||||||| ||| | |||| ||||||| ||||||||||||||||||||||    
T  27555660 tctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgccgatt 27555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 31050391 - 31050315
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgc 248  Q
    |||||||||||  | ||||||||||||| |||||||||||   |||| ||||||||| |||||||||||||||||||    
T  31050391 gtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatttgc 31050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 8705870 - 8705789
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||| | | |||||||||| ||| |||||||||||  || | |||  |||||||||||||||||||||||||||||    
T  8705870 gtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 30964803 - 30964872
Alignment:
Q  187 catttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    ||||||||||||| |||||||||||| ||| | |||| ||||||  ||||||||||||||| ||||||||    
T  30964803 catttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatatttgtcgattcaa 30964872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 46698509 - 46698428
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| |||| ||||||| ||| | || |  ||||||||||||||||||||||| ||||    
T  46698509 gtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 4306056 - 4306139
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | ||||| ||||||  ||||| |||||| ||| | || |||||||||| |||||||||||||||||||||||    
T  4306056 gtctatatgcggcaccatttatatcttt-ttcgttcataccttgcgtcttccggggatgacatttaataatatttgccgattcaa 4306139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 35341083 - 35341006
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcgggg--atgacgtttaataatatttg 247  Q
    ||||||||| || | ||||||||||||| |||||||||||  ||| | ||||||||  ||||||||||||||||||||    
T  35341083 gtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 8255378 - 8255459
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||||  ||||||| ||| |  || |||||| |||  ||||||||||||||||||||||    
T  8255378 gtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8255459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 8268796 - 8268877
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | |||||||||||||  ||||||| ||| |  || |||||| |||  ||||||||||||||||||||||    
T  8268796 gtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggagatagcgtttaataatatttgccgatt 8268877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 49528437 - 49528514
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgcc 249  Q
    |||||||||||| | ||||||||||||| |||||||||||| |   | |||||||| ||  ||||||| |||||||||    
T  49528437 gtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatgatatttgcc 49528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 6056 - 6131
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttg 247  Q
    |||||||| ||| | |||||||||||||  |||| |||| | ||| | ||||||||||||||||||||||||||||    
T  6056 gtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaataatatttg 6131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 48686 - 48767
Alignment:
Q  172 gtctatatgcggaaacatttgtatcttgcttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgatt 253  Q
    |||||||||||| | ||||||||||||| || ||||||| | ||  | ||||||||| |||||| |||||||||||| ||||    
T  48686 gtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatatttgcggatt 48767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 35525 - 35470
Alignment:
Q  201 ttcgtccataccatgcatattgcggggatgacgtttaataatatttgccgattcaa 256  Q
    |||||||||||| | | | || ||||||||||||| ||||||||||||||||||||    
T  35525 ttcgtccataccttacgtcttacggggatgacgttcaataatatttgccgattcaa 35470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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