View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5664_low_6 (Length: 245)
Name: NF5664_low_6
Description: NF5664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5664_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 51866714 - 51866503
Alignment:
| Q |
19 |
gaactgttctggcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcattcatctgaatttattatttttg |
118 |
Q |
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| T |
51866714 |
gaactgttctggcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcc--catctgaatttattattattg |
51866617 |
T |
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| Q |
119 |
tgttggtttgcatgtcaccaccccctcatctcacaatctgctatgtcttaatttaggacaaatttatgacaaaatcctgaatttattattatcatattaa |
218 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51866616 |
tgttggtttacctgtcaccaccccctcatctcacaatctgctatgtcttaatttatgacaaatttatgacaaaatcctgaatttatcattatcatattaa |
51866517 |
T |
|
| Q |
219 |
aatatgccatgatg |
232 |
Q |
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||| |||||||||| |
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| T |
51866516 |
aatgtgccatgatg |
51866503 |
T |
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