View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665-Insertion-1 (Length: 320)
Name: NF5665-Insertion-1
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 53510785 - 53510878
Alignment:
| Q |
8 |
ctctgttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaattagttcgagcgctacatgcaggggatatattaaaag |
101 |
Q |
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| T |
53510785 |
ctctgttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaactagttcgagcgctacatgcaggggatatattaaaag |
53510878 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 53514438 - 53514529
Alignment:
| Q |
12 |
gttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaattagttcgagcgct--acatgcaggggatatattaaaag |
101 |
Q |
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| T |
53514438 |
gttcaatattctggacaattttgtcctttcctctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaag |
53514529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 53524904 - 53524986
Alignment:
| Q |
12 |
gttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaattagttcgagcgctacatgcaggggatata |
94 |
Q |
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| T |
53524904 |
gttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctgaactagttcgaacgctacatgcatgggatata |
53524986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 53548482 - 53548564
Alignment:
| Q |
13 |
ttcaatattctggacaattttgtcctttcctctctccagaaaccttcctgaattagttcgagcgctacatgcaggggatatat |
95 |
Q |
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| T |
53548482 |
ttcaatattctggataattttgtcctttcctctcttcagaaacattcctgaactagttcgaaccctacaggaaggggatatat |
53548564 |
T |
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