View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665-Insertion-4 (Length: 390)
Name: NF5665-Insertion-4
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 3844138 - 3844522
Alignment:
| Q |
7 |
acctatagaccaaaattgatgactagcaagataagtcctagacgtggttagacaaggtgattaggtaaccttttaatactaattctaaaa-aatgcatag |
105 |
Q |
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| T |
3844138 |
acctatagaccaaaattgatgactagcaagataagtcctagacgtggttagacaaggtgattaggtaaccttttaatactaattctaaaaaaatgcatag |
3844237 |
T |
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| Q |
106 |
atataatcatcaatgttaaatattgttttgaacaaaaaattcaatgaacaaaactagaagcttccatacacctatgatcttgatggaaaacggctacaaa |
205 |
Q |
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| T |
3844238 |
atataatcataaatgttaaatattgttttgaacaaaaaattcaatgaacaaaactagaagcttccatacacctatgatcttgatggaaaacggctacaaa |
3844337 |
T |
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| Q |
206 |
aggcaaattgcacattctttaatagcagaacagtattcgttgatacagagatcaaggagaacgaatcaaatagagatttgagacagcgtaatatagtaaa |
305 |
Q |
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| T |
3844338 |
aggcaaattgcacattctttaatagcagaacagttttcgttgatacagagatcaaggagaacgaatcaaatagagatttgagacagcgtaatatagtaaa |
3844437 |
T |
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| Q |
306 |
tattaacattccaaaataataaaaatttaccgacattcacaaaaattagatttatgcaatcagtttccatactaatttcattatg |
390 |
Q |
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| T |
3844438 |
tattaacattccaaaataataaaaatttaccgacattcacaaaaattagatttatgcaatcagtttccatactaatttcattatg |
3844522 |
T |
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