View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665-Insertion-5 (Length: 360)
Name: NF5665-Insertion-5
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 41835110 - 41834792
Alignment:
| Q |
7 |
actattaatgagacctgttttatcagaaaaggagaaaagatggg-ccacaattgaaaaataaaaacgggtgcgcacaataggaacatttcatgggactaa |
105 |
Q |
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| T |
41835110 |
actattaatgagacctattttatcgcataaggataaaagatggggccacaattgaaaaataaaaacgggtgcgcacaataggaacatttcatgggactaa |
41835011 |
T |
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| Q |
106 |
aaatacgattagctcaaaaaagtagaacatacacactatacacatttaaatattagtttttcttc------ttctaaatcttacaatttttacaataaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
41835010 |
aaatacgattagctcaaaaaagtagaacatacacactatacacatttaaatattagtttttcttcttcttcttcttaatcttacaatttttaaaataaaa |
41834911 |
T |
|
| Q |
200 |
tggtcctacagtaattcggagctagaccataaggtaagtaaaagtgtaaaccttgtcaaaatatcattagaaatttacaaacaagatttgatagactcta |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
41834910 |
tggtgctacagtaattcggagctagaccataaggtaagtaaaagtgtaaaccttgtcaaaatatcattagaaatttacaatcaaaatttgatagactcta |
41834811 |
T |
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| Q |
300 |
gttaagtaggcttatctgg |
318 |
Q |
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||||||||||||||||||| |
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| T |
41834810 |
gttaagtaggcttatctgg |
41834792 |
T |
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