View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665-Insertion-6 (Length: 345)
Name: NF5665-Insertion-6
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 7967248 - 7966914
Alignment:
| Q |
10 |
tctcccaaagagcaataacctcattttgggtcaaataatttttagggagtctaatatggacagctttgttcaatgtgttgggatcatttgctgctttaat |
109 |
Q |
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| T |
7967248 |
tctcccaaagagcaataacctcattttgggtcaaataatttttggggagtcttatatggacagctttgttcaatgtgttgggatcatttgctgctttaat |
7967149 |
T |
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| Q |
110 |
ggtaaaggtcccaacatcagcctcagtgacatacgctcctgnnnnnnnntaaaataaggcatatgttgaaacaattgaatgatgtatgtttagtagaata |
209 |
Q |
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| T |
7967148 |
ggtaaaagtcccaacatcagcctcagtgacataagctcctgaaaaaaaa-aaattaaggcaaatgttgaaacaattgaatgatgtatgtttagtagaata |
7967050 |
T |
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| Q |
210 |
ctagtactaaaactgttttgtgactaagtctgttacctttcacatttccatctccaagaatgacaactttgtcgcgaggaggatcagtgacgtcgagttg |
309 |
Q |
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| T |
7967049 |
ctagtactaaaactgttttgtgaataagtttgctacctttcacatttccatctccaagaatgacaactttatcccgaggaggatcagtgacgtcgagttg |
7966950 |
T |
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| Q |
310 |
agccaagttacgtaagaagtaaccggtaaaggcgtg |
345 |
Q |
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| T |
7966949 |
agccaagttacgtaagaagtaaccggtaaaggcgtg |
7966914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 7954370 - 7954034
Alignment:
| Q |
10 |
tctcccaaagagcaataacctcattttgggtcaaataatttttagggagtctaatatggacagctttgttcaatgtgttgggatcatttgctgctttaat |
109 |
Q |
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| T |
7954370 |
tctcccaaagagaaataacctcattttgggtcaaataatttttggggagtcttatatggacagctttgttcaatgtgttgggatcatttgctgctttaat |
7954271 |
T |
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| Q |
110 |
ggtaaaggtcccaacatcagcctcagtgacatacgctcctgnnnnnnnntaaaat-aaggcatatgttgaaacaattgaatgatgtatgtttagtagaat |
208 |
Q |
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| T |
7954270 |
ggtaaaagtcccaacatcagcctcagtgacataagctcctgaaaaaaaaaaaaattaaggcaaatgttgaaacaattgaatgatgtatgtttagtagaat |
7954171 |
T |
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| Q |
209 |
actagtactaaaactgttttgtgactaagtctgttacctttcacatttccatctccaagaatgacaactttgtcgcgaggaggatcagtgacgtcgagtt |
308 |
Q |
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| T |
7954170 |
actagtactaaaactgttttgtgaataagtttgctacctttcacatttccatctccaagaatgacaactttatcccgaggaggatcagtgacgtcgagtt |
7954071 |
T |
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| Q |
309 |
gagccaagttacgtaagaagtaaccggtaaaggcgtg |
345 |
Q |
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| T |
7954070 |
gagccaagttacgtaagaagtaaccggtaaaggcgtg |
7954034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 7942824 - 7942772
Alignment:
| Q |
240 |
tgttacctttcacatttccatctccaagaatgacaactttgtcgcgaggagga |
292 |
Q |
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| T |
7942824 |
tgttacctttgacatttccatctccaagaatgaccactttatcgcggggagga |
7942772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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