View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_high_10 (Length: 346)
Name: NF5665_high_10
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 1350367 - 1350676
Alignment:
| Q |
1 |
ctcagacctactggttttctggaagaatgaaagaaaaaatatatattttcagctcattattacatacatatatgtgtgtggataaacatgtaaatagatg |
100 |
Q |
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| T |
1350367 |
ctcagacctactggttttctagaagaatgaaagaaaaaatatatattttcagctcattattacatacatatatgtgtgtggataaacatgtaaatagatg |
1350466 |
T |
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| Q |
101 |
gtaggtaaagtccagtccagcacatcatatgacacaattagtatattgtaattaataaataaatattgattgctaatttatgttcattcatatatatcat |
200 |
Q |
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| T |
1350467 |
gtaggtaaagtccagtccagcacatcatatgacacaattagtatattgtaattaataaataaatattgattgctaatttatgttcattcatatatatcat |
1350566 |
T |
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| Q |
201 |
attaaaagtctcaggcaattttatttgaatagatattattggtgagatttgcagttgaagattcaacccttcctcttccactcttatcttattcatagaa |
300 |
Q |
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| T |
1350567 |
attaaaagtctcaggcaattttatttgaatagatattattggtgagatttgcagttgaagattcaacccttcctcttccactcttatcttattcatagaa |
1350666 |
T |
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| Q |
301 |
attcaataaa |
310 |
Q |
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|||||||||| |
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| T |
1350667 |
attcaataaa |
1350676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 1353798 - 1353847
Alignment:
| Q |
225 |
ttgaatagatattattggtgagatttgcagttgaagattcaacccttcct |
274 |
Q |
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| T |
1353798 |
ttgaatagatatgattggtgagatttgcaattgaagattcaatccttcct |
1353847 |
T |
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