View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_high_16 (Length: 251)
Name: NF5665_high_16
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 13949611 - 13949379
Alignment:
| Q |
16 |
atgtttatgaagaaaaaggcagagaatcaaaataaaaaatagatgtgagagcttggaaattgaaatcaactcaaatttttaaattagggtttgcaaacaa |
115 |
Q |
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| T |
13949611 |
atgtttatgaagaaaaaggcaaagaatcaaaataaaaaatagatgtgagagcttggaaattgaaatcaactcagatttttaaattagggtttgcaaacaa |
13949512 |
T |
|
| Q |
116 |
ttatagcaacattataaagttttagatgtcttagcaacatcgtgacgataattgcaattgtatcatttgtatcgtgtcatcatatcaaagtcacgaccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
13949511 |
ttatagcaacattataaagttttagatgtcttagcaacatcgtgacgataattgcaattgcatcatttgtatcgtgtcaccatatcaaagtcacgaccac |
13949412 |
T |
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| Q |
216 |
aaccacaatttaaaaccataattttcttccaat |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13949411 |
aaccacaatttaaaaccataattttcttccaat |
13949379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 4038331 - 4038563
Alignment:
| Q |
16 |
atgtttatgaagaaaaaggcagagaatcaaaataaaaaatagatgtgagagcttggaaattgaaatcaactcaaatttttaaattagggtttgcaaacaa |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4038331 |
atgtttatgaagaaaaaggcatagaatcaaaataaaaaataggtgtgagagcttggaaattgaaatcaactcagatttttaaattagggtttgcaaacaa |
4038430 |
T |
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| Q |
116 |
ttatagcaacattataaagttttagatgtcttagcaacatcgtgacgataattgcaattgtatcatttgtatcgtgtcatcatatcaaagtcacgaccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
4038431 |
ttatagcaacattataaagttttagatgtcttagcaacatcgtgaccataattgcaattgcatcatttgtatcgtgtcaccatatcaaagtcacgaccac |
4038530 |
T |
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| Q |
216 |
aaccacaatttaaaaccataattttcttccaat |
248 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
4038531 |
aaccacaatttaaaaccataattttctttcaat |
4038563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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