View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_high_2 (Length: 423)
Name: NF5665_high_2
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 1349962 - 1350366
Alignment:
| Q |
19 |
ctgtttactttcattgttgctcaaacttttcttagcatgctgtgtcattttaagtatggaactttcttcttttttggaggttgggtggttatgatgacag |
118 |
Q |
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| T |
1349962 |
ctgtttactttcattgttgctcaaacttttcttagcatgctgtgtcatttcaagtatggaactttcttcttttttggaggttgggtggttattatgacag |
1350061 |
T |
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| Q |
119 |
tgtttgtttattttctgttaccagaaaccaagaatgttccaattgagcaaatggatagggtttggagagaacannnnnnnnggaagagaattgttggagt |
218 |
Q |
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| T |
1350062 |
tgtttgtttattttctgttaccagaaaccaagaatgttccaattgagcaaatggatagggtttggagagaacattttttttggaagagaattgttggaga |
1350161 |
T |
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| Q |
219 |
caagattgaaggcaaacaaactgtggtgccttaactaattacgaccgacaacaaaatatggatacgacattgatattgacacatttgacattgataaaat |
318 |
Q |
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| T |
1350162 |
caagattgaaggcaaacaaactgtggtgccttaactaattacgaccgacaacaaaatatggatacgaaattgatattgacacatttgacattgataaaat |
1350261 |
T |
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| Q |
319 |
tagaaaatgtgaaatatttgaatgtaaccacatatgtcaatgtcggacaccaaacacatctcaatgctacatagttaatcagtttagtaagtaccaaaat |
418 |
Q |
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| T |
1350262 |
tagaaaatgtgaaatatttgaatgtaaccaaatatgtcaatgtcggacaccaaacacgtctcagtgctacatagttaatcagtgtagtaagtaccaaaat |
1350361 |
T |
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| Q |
419 |
gtctt |
423 |
Q |
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| T |
1350362 |
gtctt |
1350366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 1356925 - 1357030
Alignment:
| Q |
25 |
actttcattgttgctcaaacttttcttagcatgctgtgtcattttaagtatggaactttcttcttttttggaggttgggtggttatgatgacagtgtttg |
124 |
Q |
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| T |
1356925 |
acttttattgttgctcagacatttctatccatgctttgccacttcaagtctgggattttcttcttctttggaggttgggtggtggtgatgactgtgtttg |
1357024 |
T |
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| Q |
125 |
tttatt |
130 |
Q |
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| T |
1357025 |
tgtatt |
1357030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 3587943 - 3587983
Alignment:
| Q |
327 |
gtgaaatatttgaatgtaaccacatatgtcaatgtcggaca |
367 |
Q |
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| T |
3587943 |
gtgaaatatttgaatgtaaccacatgtgtccatgtcagaca |
3587983 |
T |
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