View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_high_6 (Length: 369)
Name: NF5665_high_6
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 59 - 350
Target Start/End: Original strand, 24659842 - 24660134
Alignment:
| Q |
59 |
ccctacatttaggtcattatcaagggcttttttgtctttgcaaaaacaaacatattacactttaatctctctcttgacaaagttgatagtgatactaaat |
158 |
Q |
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| T |
24659842 |
ccctacatttaggtcattatcaagggcttttttgtctttacaaaaacaaacatattacactttaatctccctcttgacaaagttgatagtgatactaaat |
24659941 |
T |
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| Q |
159 |
gtagttgaaatctactgattcgtggtccctataataccaatagactttttgaacaagatttgacaatttcaa-tctaagctctcaaattcccagaattat |
257 |
Q |
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| T |
24659942 |
gtagttgaaatctactgattcgtggtccctataataccaatagactttttgaacaagatttggcaatttcaattctaagctctcaaattcccagaattat |
24660041 |
T |
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| Q |
258 |
tttattctatgaacataagcctaagaaaaggagaaaaagttgaactatcaacataattaaacacaaaaataatacaatgaatattcaactatg |
350 |
Q |
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| T |
24660042 |
tttattctatgaacatgagcctaagaaaaggagaaaaagttgaactatcaacataattaaacacaaaaataatacaatgaatcttcaactatg |
24660134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 24659769 - 24659820
Alignment:
| Q |
12 |
aaaacgatacaaatcagatgtattatgtggttagggtaatttggattcccta |
63 |
Q |
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| T |
24659769 |
aaaacgatacatatcagacgtattatgtagttagggtaatttggattcccta |
24659820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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