View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5665_low_15 (Length: 287)
Name: NF5665_low_15
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 34095698 - 34095956
Alignment:
| Q |
1 |
atagataatcatgctaataagaatttgtttgactattagcatttagcacaatagaactaccattgttggtatttaaatagtactgtactattgcaaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34095698 |
atagataatcatgctaataagaatttgtttgactattagcatttagcacaatagaactaccattgttggtatctaaatagtactgtactattgcaaagca |
34095797 |
T |
|
| Q |
101 |
ctttttaggtctagctgagaagatgccatggagaataaaataaggtctatgcgtataatggaacaaacctaggatttgattagattccacttaaatacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095798 |
ctttttaggtctagctgagaagatgccatggagaataaaataaggtctatgcgtataatggaacaaacctaggatttgattagattccacttaaatacaa |
34095897 |
T |
|
| Q |
201 |
tgaatatatttgattatattcttacttgatctctatattcttcttctaatttcgtcaac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095898 |
tgaatatatttgattatattcttacttgatctctatattcttcttctaatttcgtcaac |
34095956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University