View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5665_low_17 (Length: 256)

Name: NF5665_low_17
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5665_low_17
NF5665_low_17
[»] chr3 (22 HSPs)
chr3 (94-246)||(10264434-10264586)
chr3 (45-139)||(10584508-10584605)
chr3 (45-246)||(10360125-10360323)
chr3 (49-246)||(9980930-9981128)
chr3 (19-70)||(10264589-10264640)
chr3 (45-137)||(11772569-11772661)
chr3 (48-134)||(10521560-10521646)
chr3 (44-133)||(9842279-9842368)
chr3 (160-246)||(10035554-10035637)
chr3 (160-246)||(10130479-10130562)
chr3 (50-137)||(11778628-11778715)
chr3 (48-134)||(10667804-10667890)
chr3 (144-246)||(10430271-10430365)
chr3 (155-203)||(10440982-10441030)
chr3 (49-144)||(10532547-10532642)
chr3 (79-123)||(10035642-10035686)
chr3 (84-123)||(10130567-10130606)
chr3 (207-246)||(10372416-10372455)
chr3 (207-246)||(10584436-10584475)
chr3 (85-127)||(10430198-10430240)
chr3 (155-192)||(10521475-10521512)
chr3 (49-125)||(10681377-10681453)
[»] scaffold0083 (1 HSPs)
scaffold0083 (49-246)||(54009-54207)
[»] chr2 (1 HSPs)
chr2 (108-245)||(26910559-26910693)
[»] chr4 (1 HSPs)
chr4 (161-201)||(25793905-25793945)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 10264586 - 10264434
Alignment:
Q  94 atcttgtggcaatcaatggcaaccatgcatttgggtcctctcaaataagttcaactaagcatttttcttcaattcatcaagtgagctgattatcatccac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264586 atcttgtggcaatcaatggcaaccatgcatttgggtcctctcaaataagttcaactaagcatttttcttcaattcatcaagtgagctgattatcatccac 10264487  T
Q  194 ataggcctttgaactttgatcttctgaaaagatgaaataagcattttcctttg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264486 ataggcctttgaactttgatcttctgaaaagatgaaataagcattttcctttg 10264434  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 10584605 - 10584508
Alignment:
Q  45 cattcaaatgataataaaatacaaactcattattagc---taagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctctcaaat 139  Q
    ||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  10584605 cattcaaatgataataaaatacaaactcactattagcagctaagtaaattaaatcttgtggcaatcaatggaaaccatgcatttggctcgtctcaaat 10584508  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 246
Target Start/End: Original strand, 10360125 - 10360323
Alignment:
Q  45 cattcaaatgataataaaatacaaactcattattagc---taagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcct------ctc 135  Q
    ||||||||||||||||||||||||||| | |||||||   ||||||||||||||||||||||||||||||| | |  |||   || ||| |      |||    
T  10360125 cattcaaatgataataaaatacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatggaagc--tgc---tgagtcttcaattcctc 10360219  T
Q  136 aaataagttcaactaagcatttttcttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagc 235  Q
    | | ||  ||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||       ||||||||| |||||||| ||||||||||    
T  10360220 ataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacataggc-------ctttgatctcctgaaaagttgaaataagc 10360312  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 9981128 - 9980930
Alignment:
Q  49 caaatgataataaaatacaaactcattattagc---taagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcct------ctcaaat 139  Q
    ||||||||||||||||||||||| | |||||||   |||||||||||||||||||||||||||||||     ||||   || ||| |      |||| |     
T  9981128 caaatgataataaaatacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatgg-----atgccgctgagtcttcaattcctcataa 9981034  T
Q  140 aagttcaactaagcatttttcttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattt 239  Q
    ||  ||||  ||||| |||||||||||||||||||||||| |||||||||||||||||    | |  ||||||||| |||||||||||||||||||||||    
T  9981033 aaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag---ctaggcctttgatctcctgaaaagatgaaataagcattt 9980937  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10264640 - 10264589
Alignment:
Q  19 atcggatcatgcaggttattaggaaacattcaaatgataataaaatacaaac 70  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10264640 atcggatcatgcaggttattacgaaacattcaaatgataataaaatacaaac 10264589  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 11772661 - 11772569
Alignment:
Q  45 cattcaaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctctcaa 137  Q
    |||||||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||| |||||| ||||| ||  |||||| |||||||||    
T  11772661 cattcaaatgataataaaatgcaaactgaatattagccaagtaaatacaatcttgtggctatcaattgcaactatctatttggatcctctcaa 11772569  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 10521646 - 10521560
Alignment:
Q  48 tcaaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctct 134  Q
    ||||||||||| |||||||| | | | || |||||||| ||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10521646 tcaaatgataagaaaatacataattaatactagctaagcaaattcaatcttgatgcaatcaatggcaaccatgcatttggctcctct 10521560  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 9842368 - 9842279
Alignment:
Q  44 acattcaaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctc 133  Q
    |||||||||| ||||| ||||| | ||| | |||||| ||||| |||  |||||||||||||||||||| |||||||||||||| |||||    
T  9842368 acattcaaattataatgaaataaagactgaatattaggtaagtgaatccaatcttgtggcaatcaatggtaaccatgcatttggctcctc 9842279  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 10035637 - 10035554
Alignment:
Q  160 cttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattttcctttg 246  Q
    ||||||||||  || |||||||||||||||||||||||    | |  ||||||||| ||||||||||||||||||||||||||||||    
T  10035637 cttcaattcacgaaatgagctgattatcatccacatagc---taggcctttgatctcctgaaaagatgaaataagcattttcctttg 10035554  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 10130562 - 10130479
Alignment:
Q  160 cttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattttcctttg 246  Q
    |||||||||| ||| |||||| ||||||||||||||||    | |  ||||||||| ||||||||||||||||||||||||||||||    
T  10130562 cttcaattcaccaaatgagctaattatcatccacatagc---tgggcctttgatctcctgaaaagatgaaataagcattttcctttg 10130479  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 11778628 - 11778715
Alignment:
Q  50 aaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctctcaa 137  Q
    ||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||| |||||| ||||| ||  |||||| |||||||||    
T  11778628 aaatgataataaaatgcaaactgaatattagccaagtaaatacaatcttgtggctatcaattgcaactatctatttggatcctctcaa 11778715  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 10667890 - 10667804
Alignment:
Q  48 tcaaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctct 134  Q
    ||||||||||| |||||||| | | | || |||||||| ||||  |||||||  |||||||||||||||||||||||||| ||||||    
T  10667890 tcaaatgataagaaaatacataattaatactagctaagcaaatccaatcttgatgcaatcaatggcaaccatgcatttggctcctct 10667804  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 10430271 - 10430365
Alignment:
Q  144 tcaactaagcatttttcttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattttcct 243  Q
    |||| ||||||||||||||||||||||| |||| ||||||| |||||| | |||| |        ||||||| |||||||||| ||||||||||||||||    
T  10430271 tcaaataagcatttttcttcaattcatcgagtgggctgattttcatccgcttagggc--------ttgatctcctgaaaagatcaaataagcattttcct 10430362  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 10440982 - 10441030
Alignment:
Q  155 tttttcttcaattcatcaagtgagctgattatcatccacataggccttt 203  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||    
T  10440982 tttttcttcaattcatcaagtgagcttattgtcatccacttaggccttt 10441030  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 10532642 - 10532547
Alignment:
Q  49 caaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcctctcaaataagtt 144  Q
    |||||||||| |||||||||||| |  ||| | ||| |||||  |||||||||||||||||  |||||||||||||||  |||||| ||| |||||    
T  10532642 caaatgataagaaaatacaaactgaaaattggttaattaaatccaatcttgtggcaatcaacagcaaccatgcatttgaatcctctaaaacaagtt 10532547  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 10035686 - 10035642
Alignment:
Q  79 agctaagtaaattaaatcttgtggcaatcaatggcaaccatgcat 123  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||    
T  10035686 agctgagtaaattaaatcttgtggcaatgaatggcaactatgcat 10035642  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 10130606 - 10130567
Alignment:
Q  84 agtaaattaaatcttgtggcaatcaatggcaaccatgcat 123  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  10130606 agtaaattaaatcttgtggcaatgaatggcaactatgcat 10130567  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 10372416 - 10372455
Alignment:
Q  207 ctttgatcttctgaaaagatgaaataagcattttcctttg 246  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  10372416 ctttgatctcctgaaaagatgaaataaacattttcctttg 10372455  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 10584475 - 10584436
Alignment:
Q  207 ctttgatcttctgaaaagatgaaataagcattttcctttg 246  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  10584475 ctttgatctcctgaaaagttgaaataagcattttcctttg 10584436  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 10430198 - 10430240
Alignment:
Q  85 gtaaattaaatcttgtggcaatcaatggcaaccatgcatttgg 127  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||    
T  10430198 gtaaattcaatcttgtggcaatcaatgacaaccatacatttgg 10430240  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 10521512 - 10521475
Alignment:
Q  155 tttttcttcaattcatcaagtgagctgattatcatcca 192  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  10521512 tttttcttcatttcatcaagtgagctgattttcatcca 10521475  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 10681453 - 10681377
Alignment:
Q  49 caaatgataataaaatacaaactcattattagctaagtaaattaaatcttgtggcaatcaatggcaaccatgcattt 125  Q
    |||||||| | |||||||||||| |  ||| | ||| |||||  |||||||||||||||||  ||||||||||||||    
T  10681453 caaatgatcagaaaatacaaactgaaaattggttaattaaatccaatcttgtggcaatcaacagcaaccatgcattt 10681377  T

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Target: scaffold0083 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 54009 - 54207
Alignment:
Q  49 caaatgataataaaatacaaactcattattagc---taagtaaattaaatcttgtggcaatcaatggcaaccatgcatttgggtcct------ctcaaat 139  Q
    ||||||||||||||||||||||| | |||||||   |||||||||||||||||||||||||||||||     ||||   || ||| |      |||| |     
T  54009 caaatgataataaaatacaaactgactattagcagctaagtaaattaaatcttgtggcaatcaatgg-----atgccgctgagtcttcaattcctcataa 54103  T
Q  140 aagttcaactaagcatttttcttcaattcatcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattt 239  Q
    ||  ||||  ||||| |||||||||||||||||||||||| |||||||||||||||||    | |  ||||||||| |||||||||||||||||||||||    
T  54104 aaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag---ctaggcctttgatctcctgaaaagatgaaataagcattt 54200  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 26910693 - 26910559
Alignment:
Q  108 aatggcaaccatgcatttgggtcctctcaaataagttcaact-----aagcatttttcttcaattcatcaagtgagctgattatcatccacataggcctt 202  Q
    ||||| |||||| |||| || |||||||||||||||||| ||     || ||||||||||| |||||||||||||||||||| ||||| || ||||        
T  26910693 aatggaaaccatacattgggctcctctcaaataagttcacctgatacaatcatttttcttcgattcatcaagtgagctgattttcatcaacttagg---- 26910598  T
Q  203 tgaactttgatcttctgaaaagatgaaataagcattttccttt 245  Q
        ||||||||| |||||||||| ||||||||||||| ||||    
T  26910597 ----ctttgatctcctgaaaagatcaaataagcatttttcttt 26910559  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 25793945 - 25793905
Alignment:
Q  161 ttcaattcatcaagtgagctgattatcatccacataggcct 201  Q
    |||| ||||||||||||||||||| |||||||| |||||||    
T  25793945 ttcagttcatcaagtgagctgattttcatccacttaggcct 25793905  T

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