View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_23 (Length: 238)
Name: NF5665_low_23
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13949296 - 13949075
Alignment:
| Q |
1 |
cgaaatcatagtactatcgtaattttatcaaatttacgccaatataaaaatatacctagtcacgaaaaccttgacnnnnnnntgtgtctttgttagtgaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13949296 |
cgaaatcatagtactatcataattttatcaaatttacgccaatataaaaatatacctagtcacgaaaaccttgacaaaaaaatgtgtctttgttagtgaa |
13949197 |
T |
|
| Q |
101 |
gtaaatacctgtttgcattcaggagcagcacaactaacattcttaaatgtagttgatttttcaggagcaaacaaagttgaagcacaaccatcacaagcag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949196 |
gtaaatacctgtttgcattcaggagcagcacaactaacattcttaaatgtagttgatttttcaggagcaaacaaagttgaagcacaaccatcacaagcag |
13949097 |
T |
|
| Q |
201 |
tacaaggaatccaagcagcatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
13949096 |
tacaaggaatccaagcagcatc |
13949075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4038646 - 4038867
Alignment:
| Q |
1 |
cgaaatcatagtactatcgtaattttatcaaatttacgccaatataaaaatatacctagtcacgaaaaccttgacnnnnnnntgtgtctttgttagtgaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
4038646 |
cgaaatcatagtactatcataattttatcaaatgcaagccaatataaaaatatacctagtcacgaaaaccatgacaaaaaaatgtgtctttgttagtgaa |
4038745 |
T |
|
| Q |
101 |
gtaaatacctgtttgcattcaggagcagcacaactaacattcttaaatgtagttgatttttcaggagcaaacaaagttgaagcacaaccatcacaagcag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4038746 |
gtaaatacctgtttgcattcaggagcagcacaactaacattcttaaatgtagttgatttttcaggagcaaacaaagttgaagcacaaccatcacaagcag |
4038845 |
T |
|
| Q |
201 |
tacaaggaatccaagcagcatc |
222 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
4038846 |
tgcaaggaatccaagcagcatc |
4038867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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