View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5665_low_24 (Length: 236)
Name: NF5665_low_24
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34095706 - 34095486
Alignment:
| Q |
1 |
attatctatcaaattaattaattaatactagcaccttctatgtcttaacactttctaactaagtgtctaactcactagctatgtttggaatgtggtccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095706 |
attatctatcaaattaattaattaatactagcaccttctatgtcttaacactttctaactaagtgtctaactcactagctatgtttggaatgtggtccca |
34095607 |
T |
|
| Q |
101 |
ttactaaggcatggattcctatacataggccttcacactcaattttgaaacaacaatcgatgctttcaagtgtgtatcttaagggatactccaatagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095606 |
ttactaaggcatggattcctatacataggccttcacactcaattttgaaacaacaatcgatgctttcaagtgtgtatcttaagggatactccaatagttt |
34095507 |
T |
|
| Q |
201 |
taaattcttctgagaatatca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34095506 |
taaattcttctgagaatatca |
34095486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 5932469 - 5932437
Alignment:
| Q |
175 |
tatcttaagggatactccaatagttttaaattc |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
5932469 |
tatcttaagggatactccaatggttttaaattc |
5932437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University