View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_25 (Length: 236)
Name: NF5665_low_25
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 7967462 - 7967250
Alignment:
| Q |
5 |
cactcaaagattaattttgatgcaccttcagatattgtaccgctattaaaatagatataattaaaatcaaatatttttcactatttatcaactatgatta |
104 |
Q |
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| T |
7967462 |
cactcaaagattaattttgatgcaccgtcagatattgtac-gctattaaaatagatataattaaaatcaaatatttttaacgatttatcaactatgatta |
7967364 |
T |
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| Q |
105 |
acggtgtgaaaattcttaacaatatttgtcaagcgtttattttactgaccttgaatatccttgagaacttgttcctctgaaacataagttttctcaagag |
204 |
Q |
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| T |
7967363 |
acggtgtgaaaattcttaacaatatttgtcaagcgtttattttactgaccttgaatatccttgagaacttgttcctctgaaacataagttttctcaagag |
7967264 |
T |
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| Q |
205 |
tctttccgatcttt |
218 |
Q |
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| T |
7967263 |
tctttccgatcttt |
7967250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 7954533 - 7954372
Alignment:
| Q |
55 |
atagatataattaaaatcaaatatttttcactatttatcaactatgattaacggtgtgaaaattcttaacaatatttgtcaagcgtttattttactgacc |
154 |
Q |
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| T |
7954533 |
atagatataattaaaatcaaataattttaacgatttattgatt--gattaacattgtaaaaattcttaacaatatttataaagcgtttattttactgacc |
7954436 |
T |
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| Q |
155 |
ttgaatatccttgagaacttgttcctctgaaacataagttttctcaagagtctttccgatcttt |
218 |
Q |
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| T |
7954435 |
ttgaatatccttgagaacttgttcctctgaaacataagttttctcaagagtcttcccaatcttt |
7954372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 6796810 - 6796778
Alignment:
| Q |
50 |
ttaaaatagatataattaaaatcaaatattttt |
82 |
Q |
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| T |
6796810 |
ttaaagtagatataattaaaatcaaatattttt |
6796778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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