View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_27 (Length: 232)
Name: NF5665_low_27
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 51332056 - 51332242
Alignment:
| Q |
35 |
aaattgaggtggaaccaaacacacattaaatatatacttatattttctc-----atttggcaatctaacaaaccacacggtccaccgagctatgtatcca |
129 |
Q |
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| T |
51332056 |
aaattgaggtggaaccaaacacacattaaatatatacttatattttctctatatatttggcaatctaacaaaccacacggtccaccgagctatgtatcca |
51332155 |
T |
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| Q |
130 |
tcactaaattattaannnnnnnngacaggatcattaaattattaattaaaggttaatcaatccaacacattatgtccatgtggtagt |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51332156 |
tcactaaattattaattttttttgacaggatcattaaattattaattaaaggttaatcaatccaacacattatgtccatgtggtagt |
51332242 |
T |
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