View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5665_low_3 (Length: 410)

Name: NF5665_low_3
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5665_low_3
NF5665_low_3
[»] chr2 (25 HSPs)
chr2 (145-276)||(24145209-24145332)
chr2 (33-195)||(41324895-41325057)
chr2 (19-164)||(13793661-13793806)
chr2 (12-81)||(24145139-24145208)
chr2 (32-160)||(9745348-9745476)
chr2 (125-202)||(14251181-14251259)
chr2 (147-201)||(9745341-9745395)
chr2 (116-170)||(28564293-28564347)
chr2 (32-78)||(41324896-41324942)
chr2 (132-193)||(20897338-20897399)
chr2 (369-410)||(40277330-40277371)
chr2 (148-193)||(41325012-41325057)
chr2 (116-172)||(4983966-4984022)
chr2 (129-169)||(8675560-8675600)
chr2 (116-200)||(8842425-8842509)
chr2 (342-410)||(14942059-14942127)
chr2 (91-178)||(39994453-39994541)
chr2 (342-410)||(42769773-42769841)
chr2 (116-170)||(38070085-38070140)
chr2 (369-410)||(6318500-6318541)
chr2 (32-101)||(14251183-14251251)
chr2 (369-410)||(19181593-19181634)
chr2 (33-78)||(22536990-22537035)
chr2 (342-410)||(14186453-14186521)
chr2 (342-410)||(29846487-29846555)
[»] chr1 (13 HSPs)
chr1 (33-202)||(17322077-17322245)
chr1 (20-102)||(36724236-36724318)
chr1 (116-193)||(30018657-30018734)
chr1 (129-193)||(31142435-31142498)
chr1 (88-199)||(7172446-7172557)
chr1 (93-178)||(7003151-7003236)
chr1 (342-410)||(48392421-48392489)
chr1 (369-410)||(7742821-7742862)
chr1 (129-194)||(8258904-8258969)
chr1 (119-193)||(49632906-49632982)
chr1 (128-199)||(12369454-12369526)
chr1 (117-169)||(39481477-39481529)
chr1 (342-410)||(49902513-49902581)
[»] chr4 (31 HSPs)
chr4 (38-188)||(53860786-53860935)
chr4 (126-201)||(3703571-3703648)
chr4 (85-199)||(34290800-34290914)
chr4 (43-199)||(43136827-43136985)
chr4 (32-170)||(3703578-3703716)
chr4 (127-201)||(12329005-12329080)
chr4 (38-101)||(5979790-5979853)
chr4 (83-170)||(32430545-32430632)
chr4 (32-170)||(12328936-12329073)
chr4 (116-169)||(44307841-44307894)
chr4 (342-410)||(37801279-37801347)
chr4 (342-410)||(52632563-52632631)
chr4 (124-168)||(54734351-54734395)
chr4 (33-199)||(4873048-4873213)
chr4 (156-202)||(54335419-54335465)
chr4 (148-193)||(2605472-2605517)
chr4 (365-410)||(16338251-16338296)
chr4 (146-199)||(34290731-34290784)
chr4 (342-410)||(1535816-1535884)
chr4 (342-410)||(49284402-49284470)
chr4 (125-188)||(53860786-53860850)
chr4 (126-173)||(5979757-5979804)
chr4 (126-188)||(25411580-25411642)
chr4 (148-189)||(5979813-5979854)
chr4 (369-410)||(9742575-9742616)
chr4 (369-410)||(34241038-34241079)
chr4 (369-410)||(36012227-36012268)
chr4 (147-188)||(54923065-54923106)
chr4 (122-183)||(43136827-43136890)
chr4 (125-169)||(48292359-48292403)
chr4 (66-106)||(48292383-48292423)
[»] chr7 (12 HSPs)
chr7 (33-183)||(37701250-37701401)
chr7 (129-186)||(26027212-26027268)
chr7 (342-410)||(10576718-10576786)
chr7 (342-410)||(34259563-34259631)
chr7 (342-410)||(34707161-34707229)
chr7 (342-410)||(44164758-44164826)
chr7 (83-178)||(5617893-5617988)
chr7 (148-198)||(37701245-37701295)
chr7 (369-410)||(24320481-24320522)
chr7 (144-201)||(36618093-36618150)
chr7 (147-199)||(40591605-40591657)
chr7 (129-174)||(48073030-48073077)
[»] chr6 (12 HSPs)
chr6 (118-169)||(22476128-22476179)
chr6 (342-410)||(9231869-9231937)
chr6 (342-410)||(14309813-14309881)
chr6 (126-169)||(18142381-18142424)
chr6 (38-100)||(30351445-30351507)
chr6 (38-101)||(16396656-16396719)
chr6 (130-188)||(12120107-12120165)
chr6 (365-410)||(11212716-11212761)
chr6 (129-169)||(1317663-1317703)
chr6 (342-410)||(1727948-1728016)
chr6 (342-410)||(13627585-13627653)
chr6 (342-410)||(24694666-24694734)
[»] chr5 (13 HSPs)
chr5 (118-193)||(8367025-8367099)
chr5 (38-109)||(35924657-35924727)
chr5 (83-201)||(12075924-12076042)
chr5 (66-195)||(5506879-5507008)
chr5 (38-195)||(6706273-6706429)
chr5 (32-178)||(4639425-4639575)
chr5 (39-178)||(14613550-14613690)
chr5 (342-410)||(23218530-23218598)
chr5 (342-410)||(38397643-38397711)
chr5 (103-178)||(5045145-5045220)
chr5 (365-410)||(614430-614475)
chr5 (369-410)||(37169075-37169116)
chr5 (342-410)||(6257425-6257493)
[»] chr8 (9 HSPs)
chr8 (43-101)||(25939302-25939360)
chr8 (89-178)||(34676984-34677074)
chr8 (127-188)||(34307052-34307113)
chr8 (342-410)||(35806839-35806907)
chr8 (155-200)||(41667870-41667915)
chr8 (129-193)||(9040938-9041001)
chr8 (342-410)||(22324641-22324709)
chr8 (342-410)||(21525403-21525471)
chr8 (342-410)||(42072473-42072541)
[»] chr3 (11 HSPs)
chr3 (84-201)||(21808879-21808997)
chr3 (369-410)||(8950546-8950587)
chr3 (148-201)||(26452918-26452971)
chr3 (342-410)||(13856144-13856212)
chr3 (342-410)||(21853242-21853310)
chr3 (113-143)||(26851253-26851283)
chr3 (369-410)||(23467536-23467577)
chr3 (129-178)||(29722745-29722793)
chr3 (369-410)||(40845959-40846000)
chr3 (342-410)||(5391502-5391570)
chr3 (342-410)||(32352892-32352960)
[»] scaffold0079 (1 HSPs)
scaffold0079 (365-410)||(54564-54609)
[»] scaffold0110 (2 HSPs)
scaffold0110 (44-185)||(11447-11587)
scaffold0110 (44-185)||(19184-19324)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 24145209 - 24145332
Alignment:
Q  145 gattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatttactcatcatattatcaacctccattttttgcctattttaggt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24145209 gattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatttactcatcatattatcaacctccattttttgccta-------- 24145300  T
Q  245 aacatatacatcttacatcacaatcataatca 276  Q
    ||||||||||||||||||||||||||||||||    
T  24145301 aacatatacatcttacatcacaatcataatca 24145332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 41325057 - 41324895
Alignment:
Q  33 ttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagt 132  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||   ||  |||||||||||| || |||||| ||||||||||||||||||||||    
T  41325057 ttttgacatccattgtttcttagaaacacatggaaataaccaaaaacatttcaatggtagttaactatcactgacttcaaagcagaaaatcggcggtagt 41324958  T
Q  133 taactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaaca 195  Q
    ||||||| ||| || |||||||| ||||| |||||||||||||||| ||||||||| ||||||    
T  41324957 taactactgctggactttttggtaatttcaatgtgtttctaagaaacaatggatgtcaaaaca 41324895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 13793661 - 13793806
Alignment:
Q  19 tatgagtgttaccgttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcaga 118  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||  ||| ||||||||||| ||| ||||||||||||||  ||| ||| ||||||||    
T  13793661 tatgagtgttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggcttcaaagcaga 13793760  T
Q  119 aaatcggcggtagttaactaccgctagattttttggtcatttccat 164  Q
    |||||| | ||| |||||||| || || ||||||||||||||||||    
T  13793761 aaatcgacagtaattaactactgccagtttttttggtcatttccat 13793806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 24145139 - 24145208
Alignment:
Q  12 atcatcatatgagtgttaccgttttgacatccattgtttcttagaaatatatggaaattaccaaaaacac 81  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  24145139 atcatcatatgagtgttactgttttgacatccattgtttcttagaaacatatggaaattatcaaaaacac 24145208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 9745348 - 9745476
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattacc-aaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggta 130  Q
    ||||||||||||||||||||||||||| || ||||||| ||| ||||| || || |||||||||||||||   ||||||  |    ||||||||||||||    
T  9745348 gttttgacatccattgtttcttagaaacatgtggaaatgaccaaaaaaaactccggcggtagttaactactgctgacttatattaggaaaatcggcggta 9745447  T
Q  131 gttaactaccgctagattttttggtcattt 160  Q
    ||||||||||||| || |||||||||||||    
T  9745448 gttaactaccgct-gagtttttggtcattt 9745476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 14251181 - 14251259
Alignment:
Q  125 gcggtagttaactaccgctag-attttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaattt 202  Q
    ||||||||||||||||||||| | |||||| |||||||||||| ||||||||||| |||  |||| |||||||||||||    
T  14251181 gcggtagttaactaccgctaggaatttttgttcatttccatgtatttctaagaaacaataaatgtcaaaacaacaattt 14251259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 9745395 - 9745341
Alignment:
Q  147 ttttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 201  Q
    |||||||||||||||||  ||||||||||||| ||||||||| |||||| |||||    
T  9745395 ttttttggtcatttccacatgtttctaagaaacaatggatgtcaaaacagcaatt 9745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 28564347 - 28564293
Alignment:
Q  116 agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgttt 170  Q
    |||||||||| ||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28564347 agaaaatcggaggtagttaattaccgctgggttttttgatcatttccatgtgttt 28564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 41324896 - 41324942
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattaccaaaaa 78  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  41324896 gttttgacatccattgtttcttagaaacacattgaaattaccaaaaa 41324942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 20897399 - 20897338
Alignment:
Q  132 ttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    |||||||| ||| ||||||||| |||||||||||||||||||  ||||| ||||||| ||||    
T  20897399 ttaactactgctggattttttgatcatttccatgtgtttctagaaaatattggatgtcaaaa 20897338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 40277330 - 40277371
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  40277330 ttatataaatccctataaattgggcaatttctttacattttt 40277371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 41325012 - 41325057
Alignment:
Q  148 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||    
T  41325012 tttttggttatttccatgtgtttctaagaaacaatggatgtcaaaa 41325057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 4984022 - 4983966
Alignment:
Q  116 agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttct 172  Q
    ||||||||| ||||||||||||||||||  ||||||  ||||||| |||||||||||    
T  4984022 agaaaatcgacggtagttaactaccgctgaatttttaagtcatttacatgtgtttct 4983966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8675560 - 8675600
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  8675560 tagttaactaccgctggtttttttggtcatttccatgtgtt 8675600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 8842425 - 8842509
Alignment:
Q  116 agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaat 200  Q
    |||||| || ||||||||||||||||||   |||||| | |||||||||||||||||| |||| | |||| || |||| ||||||    
T  8842425 agaaaaccgacggtagttaactaccgctgagttttttagacatttccatgtgtttctaggaaacattggaagtaaaaaaaacaat 8842509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 14942059 - 14942127
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  14942059 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 14942127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 39994541 - 39994453
Alignment:
Q  91 agttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgcta-gattttttggtcatttccatgtgtttctaagaaa 178  Q
    ||||||||||| |||||||  || |||||| ||  ||||||||||||||||||| | ||||||| ||||||  ||||||||||| ||||    
T  39994541 agttaactaccgttgacttataaacagaaactcaacggtagttaactaccgctacgtttttttgatcatttttatgtgtttctaggaaa 39994453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 42769773 - 42769841
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  42769773 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 42769841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 38070085 - 38070140
Alignment:
Q  116 agaaaatcggcggtagttaac-taccgctagattttttggtcatttccatgtgttt 170  Q
    ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||||    
T  38070085 agaaaatcgacggtagttaacataccactagatttttttgtcatttccatctgttt 38070140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 6318500 - 6318541
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| |||||||||| ||||||||||||||||| ||||||    
T  6318500 ttatataaatccctataaattgggcaatttctttagattttt 6318541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 14251251 - 14251183
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactacc 101  Q
    ||||||||||  ||||||||||||||||| |||||||| | ||||||  | | |||||||||||||||||    
T  14251251 gttttgacatttattgtttcttagaaatacatggaaatgaacaaaaattc-ctagcggtagttaactacc 14251183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 19181634 - 19181593
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  19181634 ttatataaacccctataaattgggcaatttctttacattttt 19181593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 22537035 - 22536990
Alignment:
Q  33 ttttgacatccattgtttcttagaaatatatggaaattaccaaaaa 78  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||    
T  22537035 ttttgacatccatcgtttcctagaaatacatggaaatgaccaaaaa 22536990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 14186453 - 14186521
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||| ||||    
T  14186453 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacactttt 14186521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 29846555 - 29846487
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||| ||||||||||||||||||    
T  29846555 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 29846487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 17322245 - 17322077
Alignment:
Q  33 ttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagt 132  Q
    |||||||| ||||||||||||||||| | || ||||| || ||||| ||| |||||||| |||||||   ||| ||||||||||||||| | ||||||||    
T  17322245 ttttgaca-ccattgtttcttagaaacacatagaaataacaaaaaatacatcagcggtaattaactattgttggctttaaagcagaaaaccagcggtagt 17322147  T
Q  133 taactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaattt 202  Q
    |||||||| ||   ||||||| |||||||||| ||||||||||||| |||  |||| |||||| ||||||    
T  17322146 taactaccactgagttttttgatcatttccatttgtttctaagaaacaatatatgtcaaaacagcaattt 17322077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 36724318 - 36724236
Alignment:
Q  20 atgagtgttaccgttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactacca 102  Q
    ||||||||| | ||||| |||||||||| ||| ||||||||||||||||| |||||||| |  ||| ||||||||||||||||    
T  36724318 atgagtgttgctgttttcacatccattgcttcctagaaatatatggaaataaccaaaaaaaacccaacggtagttaactacca 36724236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 30018657 - 30018734
Alignment:
Q  116 agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtg-tttctaagaaataatggatgttaaaa 193  Q
    |||||||||||||||||||||||||| | |  |||||||||||||||||||| |||||| |||| ||||||||| ||||    
T  30018657 agaaaatcggcggtagttaactaccg-ttgggtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaa 30018734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 31142498 - 31142435
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    ||||||||||||||| || |||||| | ||||||||||||||||| |||||||||||||| ||||    
T  31142498 tagttaactaccgct-gagtttttgattatttccatgtgtttctatgaaataatggatgtcaaaa 31142435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 7172446 - 7172557
Alignment:
Q  88 ggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatg 187  Q
    |||||||||||| |  |||||| |||  ||||||||||  ||||||||||||||||   |||||||||||||| |   ||| ||||||||| ||||||||    
T  7172446 ggtagttaactagcgctgacttcaaaatagaaaatcggtagtagttaactaccgctgagttttttggtcatttactaatgtctctaagaaacaatggatg 7172545  T
Q  188 ttaaaacaacaa 199  Q
    | | ||||||||    
T  7172546 taagaacaacaa 7172557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 7003151 - 7003236
Alignment:
Q  93 ttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaa 178  Q
    ||||||||| |||||||  || ||||||| ||  | || |||||||||||||  |||||||||||||| |||||||||||| ||||    
T  7003151 ttaactaccgttgacttataaacagaaaaccgttgataattaactaccgctaagttttttggtcattttcatgtgtttctaggaaa 7003236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 48392421 - 48392489
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| |||||||||| ||||||||||||| ||||||||||    
T  48392421 tttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattacattttt 48392489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 7742821 - 7742862
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  7742821 ttatataaacccctataaattgggcaatttctttacattttt 7742862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 8258969 - 8258904
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaac 194  Q
    |||||||||||||||   |||||| ||||||| ||||||||| || |||| ||||||||| |||||    
T  8258969 tagttaactaccgctgagttttttagtcattttcatgtgtttttaggaaacaatggatgtgaaaac 8258904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 49632906 - 49632982
Alignment:
Q  119 aaatcggcggtagttaactaccgctag-at-tttttggtcatttccatgtgtttctaagaaat-aatggatgttaaaa 193  Q
    ||||| |||||||||||||||| | || || ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  49632906 aaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttct-agaaatcaatggatgtcaaaa 49632982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 12369526 - 12369454
Alignment:
Q  128 gtagttaactaccgctag-attttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 199  Q
    |||||||||||||||| | || |||||||||||| || |||||| ||| ||| ||||||||| | ||||||||    
T  12369526 gtagttaactaccgctgggatcttttggtcattttcacgtgtttttaaaaaacaatggatgtaagaacaacaa 12369454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 39481477 - 39481529
Alignment:
Q  117 gaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    ||||| ||||||||||||| ||| |||  ||||||||||||||||||| ||||    
T  39481477 gaaaaccggcggtagttaattactgctgaattttttggtcatttccatatgtt 39481529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 49902581 - 49902513
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| || |||||||||||||||||||||    
T  49902581 tttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttacattttt 49902513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 53860786 - 53860935
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaact 137  Q
    ||||||| |||||| |||||| | |||||||| |||||||| |  ||| ||||||||||| |||  ||||||  ||  |||||||| ||||| |||||||    
T  53860786 acatccaatgtttcctagaaacacatggaaatgaccaaaaaaat-ccaacggtagttaaccaccgctgacttataactagaaaatcagcggtggttaact 53860884  T
Q  138 accgctagattttttggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    ||| ||  |||||||||||||||||||||||||||| |||| |||||||||    
T  53860885 accactgaattttttggtcatttccatgtgtttctaggaaacaatggatgt 53860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 3703648 - 3703571
Alignment:
Q  126 cggtagttaactaccgcta--gattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 201  Q
    ||||||||||||||||||   |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  3703648 cggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgttaaaacaacaatt 3703571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 34290800 - 34290914
Alignment:
Q  85 agcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatgg 184  Q
    ||||||||||||||| || |||||| ||| ||||||| || ||||||||||||||| ||  |||||| |||||||||||| ||||| ||||||| ||| |    
T  34290800 agcggtagttaactatcactgacttcaaaacagaaaaccgacggtagttaactaccacttaatttttgggtcatttccatatgtttttaagaaacaatag 34290899  T
Q  185 atgttaaaacaacaa 199  Q
    |||| | ||||||||    
T  34290900 atgtaagaacaacaa 34290914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 43136827 - 43136985
Alignment:
Q  43 cattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgc 142  Q
    |||||||||||| ||| | |||||||| || ||||| || |  |||||||||||||| |   |||||  ||| |||||| ||||||||||||||||| |     
T  43136827 cattgtttcttaaaaacacatggaaatgactaaaaatactctggcggtagttaactatcgccgacttataagtagaaaaacggcggtagttaactacagt 43136926  T
Q  143 tagatttt--ttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 199  Q
    | ||||||  |||||||||| ||||| |||||| ||||||||| |||| ||||||||||    
T  43136927 tggattttctttggtcattttcatgtatttctaggaaataatgtatgtgaaaacaacaa 43136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 3703578 - 3703716
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtag 131  Q
    ||||| ||||||||||||| ||||||| | ||| |||| ||||||||  || |||||||||||||||||| |||||||  ||  |  ||| || || ||     
T  3703578 gttttaacatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttataacaaagaaaccgacgataa 3703677  T
Q  132 ttaactaccgctagattttttggtcatttccatgtgttt 170  Q
    |||||||||||| |  |||||||||||||||||||||||    
T  3703678 ttaactaccgctggggtttttggtcatttccatgtgttt 3703716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 12329005 - 12329080
Alignment:
Q  127 ggtagttaactaccgctag-attttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 201  Q
    ||||||||||||||||||| | |||||| |||||| ||||||||||||| ||| ||||||||| ||||||||||||    
T  12329005 ggtagttaactaccgctaggagtttttgatcattttcatgtgtttctaaaaaacaatggatgtcaaaacaacaatt 12329080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 5979853 - 5979790
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactacc 101  Q
    |||| |||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactacc 5979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 32430545 - 32430632
Alignment:
Q  83 ccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgttt 170  Q
    ||||||||||||||||||||  |||||  ||  ||||||||||||||||||||||||||||  | ||||| ||| ||| |||||||||    
T  32430545 ccagcggtagttaactaccacagacttataactagaaaatcggcggtagttaactaccgctgaactttttagtctttttcatgtgttt 32430632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 12329073 - 12328936
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtag 131  Q
    ||||||||||||||||||| ||||||| | ||| |||| | ||||||| | | |||||||||||||||||| ||| ||  || ||||||| ||| | |||    
T  12329073 gttttgacatccattgttttttagaaacacatgaaaatgatcaaaaactc-ctagcggtagttaactaccactgaattataaacagaaaaccggtgatag 12328975  T
Q  132 ttaactaccgctagattttttggtcatttccatgtgttt 170  Q
    |||||||||| |   ||||||| | |||| |||||||||    
T  12328974 ttaactaccgttgatttttttgataattttcatgtgttt 12328936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 44307894 - 44307841
Alignment:
Q  116 agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    |||||| ||||||||||||||||||| |  ||||||||||||||||||||||||    
T  44307894 agaaaaccggcggtagttaactaccgttgaattttttggtcatttccatgtgtt 44307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 37801279 - 37801347
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| ||||  ||||| | |||||||||| |||||||||| ||||||||| ||||||||||||||    
T  37801279 tttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttt 37801347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 52632631 - 52632563
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| |||||||||| ||||||||||||||||||||||||    
T  52632631 tttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttt 52632563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 54734395 - 54734351
Alignment:
Q  124 ggcggtagttaactaccgctagattttttggtcatttccatgtgt 168  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  54734395 ggcggtagttaactaccactcgattttttggtcatttccatgtgt 54734351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 4873048 - 4873213
Alignment:
Q  33 ttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagt 132  Q
    ||||||| |||||| |||  || ||| | |||||||| | |||||||||  ||||||||||||||||||  ||||||  ||  ||||||  |  ||||||    
T  4873048 ttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaactgatggtagt 4873147  T
Q  133 taactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 199  Q
    |||||||| || |  ||||| ||||||| ||||||||| || |||| ||||||||| |||| |||||    
T  4873148 taactaccact-gggtttttagtcattttcatgtgtttttaggaaagaatggatgtcaaaaaaacaa 4873213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 54335465 - 54335419
Alignment:
Q  156 catttccatgtgtttctaagaaataatggatgttaaaacaacaattt 202  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  54335465 catttccatgtgtttctaagaaacaatggatgtgagaacaacaattt 54335419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 2605472 - 2605517
Alignment:
Q  148 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||    
T  2605472 tttttgatcatttccatgtgtttctaggaaataatggatgtcaaaa 2605517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 16338251 - 16338296
Alignment:
Q  365 ttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||    
T  16338251 ttttttatataaatccctataaattggacaatttctttacattttt 16338296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 34290784 - 34290731
Alignment:
Q  146 attttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 199  Q
    |||||||  |||||||||||||||||||||||| ||||||||| | ||||||||    
T  34290784 atttttttatcatttccatgtgtttctaagaaacaatggatgtgagaacaacaa 34290731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 1535884 - 1535816
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  1535884 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 1535816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 49284470 - 49284402
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  49284470 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 49284402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 53860850 - 53860786
Alignment:
Q  125 gcggtagttaactaccgctagatttttt-ggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    ||||| ||||||||||| | |||||||| ||||||||||||||||||||| |||| | |||||||    
T  53860850 gcggtggttaactaccgttggatttttttggtcatttccatgtgtttctaggaaacattggatgt 53860786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 5979804 - 5979757
Alignment:
Q  126 cggtagttaactaccgctagattttttggtcatttccatgtgtttcta 173  Q
    ||||||||||||||||||   |||||| ||||||||||||||||||||    
T  5979804 cggtagttaactaccgctgagttttttagtcatttccatgtgtttcta 5979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 25411642 - 25411580
Alignment:
Q  126 cggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    |||||||||||||||| ||| |||||| ||||| | |||||||||||| ||| || |||||||    
T  25411642 cggtagttaactaccgttagtttttttagtcatgtacatgtgtttctaggaactattggatgt 25411580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 5979813 - 5979854
Alignment:
Q  148 tttttggtcatttccatgtgtttctaagaaataatggatgtt 189  Q
    ||||||||||||||||| ||||||||||||| |||| |||||    
T  5979813 tttttggtcatttccatttgtttctaagaaacaatgaatgtt 5979854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 9742575 - 9742616
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||    
T  9742575 ttatattaacccctataaattgggcaatttctttagattttt 9742616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 34241079 - 34241038
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  34241079 ttatataaacccctataaattgggcaatttctttacattttt 34241038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 36012227 - 36012268
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  36012227 ttatataaacccctataaattgggcaatttctttacattttt 36012268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 54923065 - 54923106
Alignment:
Q  147 ttttttggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  54923065 ttttttggtcatttccatgtgtctctaggaaacaatggatgt 54923106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 43136890 - 43136827
Alignment:
Q  122 tcggcggtagttaactaccgctagatt--ttttggtcatttccatgtgtttctaagaaataatg 183  Q
    |||||| |||||||||||||| ||| |  |||| ||||||||||||||||| ||||||| ||||    
T  43136890 tcggcgatagttaactaccgccagagtatttttagtcatttccatgtgtttttaagaaacaatg 43136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 48292403 - 48292359
Alignment:
Q  125 gcggtagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    ||||||||||||||||| |   |||||||||||||||||||||||    
T  48292403 gcggtagttaactaccgttgagttttttggtcatttccatgtgtt 48292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 48292423 - 48292383
Alignment:
Q  66 aaattaccaaaaacacaccagcggtagttaactaccattga 106  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  48292423 aaatgaccaaaaacactccagcggtagttaactaccgttga 48292383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 37701250 - 37701401
Alignment:
Q  33 ttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagt 132  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||||  | |  |||||||||||||  ||||||  ||  | ||||||| |||||||    
T  37701250 ttttgacatccattgtttcttagaaacatatggaaatgatcaaaaacacttcggttgtagttaactaccgctgacttataactaaaaaatcgacggtagt 37701349  T
Q  133 taactaccgct-agattttttggtcatttccatgtgtttctaagaaataatg 183  Q
    ||||||||| | |  ||||||| | |||||||||| ||| ||||||| ||||    
T  37701350 taactaccgttgaatttttttgataatttccatgtatttttaagaaacaatg 37701401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 26027268 - 26027212
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggat 186  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||  |||||||||||    
T  26027268 tagttaattaccgctatattttt-ggtcatttccatgtgtttctagaaaataatggat 26027212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 10576786 - 10576718
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  10576786 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 10576718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 34259631 - 34259563
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  34259631 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 34259563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 34707229 - 34707161
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  34707229 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 34707161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 44164758 - 44164826
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| ||||  ||||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  44164758 tttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 44164826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 5617893 - 5617988
Alignment:
Q  83 ccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaa 178  Q
    |||||||||||||||||||  || |||  ||  |||||| |||||||| |||||||||||| |  ||||| ||| ||| |||||||||||| ||||    
T  5617893 ccagcggtagttaactaccgctggcttataactagaaaaccggcggtaattaactaccgctgggctttttagtctttttcatgtgtttctaggaaa 5617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 37701295 - 37701245
Alignment:
Q  148 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaaca 198  Q
    |||||| |||||||||| ||||||||||||| ||||||||| |||| ||||    
T  37701295 tttttgatcatttccatatgtttctaagaaacaatggatgtcaaaaaaaca 37701245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 24320481 - 24320522
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  24320481 ttatataaacccctataaattgggcaatttctttacattttt 24320522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 36618150 - 36618093
Alignment:
Q  144 agattttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 201  Q
    |||||||||| | ||||||| |||||| ||||||| |||| |||| ||||||||||||    
T  36618150 agattttttgataatttccaagtgtttttaagaaacaatgaatgtcaaaacaacaatt 36618093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 40591605 - 40591657
Alignment:
Q  147 ttttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaa 199  Q
    |||||||||||||| ||||||||||||| |||  |||||||| | ||||||||    
T  40591605 ttttttggtcattttcatgtgtttctaataaactatggatgtaagaacaacaa 40591657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 48073077 - 48073030
Alignment:
Q  129 tagttaactaccgctagatt--ttttggtcatttccatgtgtttctaa 174  Q
    |||||||||| ||||||| |  ||||||||||||||||||||||||||    
T  48073077 tagttaactatcgctagagtatttttggtcatttccatgtgtttctaa 48073030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 22476128 - 22476179
Alignment:
Q  118 aaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  22476128 aaaatcgacggtagttaactaccgctgaattttttggtcatttccatgtgtt 22476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 9231869 - 9231937
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| |||||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  9231869 tttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 9231937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 14309813 - 14309881
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| |||||||||| ||||||||||||||||||||||||    
T  14309813 tttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttt 14309881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 18142424 - 18142381
Alignment:
Q  126 cggtagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  18142424 cggtagttaactaccgcttgattttttggtcattttcatgtgtt 18142381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 30351445 - 30351507
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactac 100  Q
    ||||| |||||||| |||||| ||||| |||| ||||||||||| ||| ||||||||||||||    
T  30351445 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 30351507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 16396719 - 16396656
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactacc 101  Q
    ||||||||||||| |||||||||  || |||| || |||||||| ||| |||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactacc 16396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 12120165 - 12120107
Alignment:
Q  130 agttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    |||||||||||||||| |||||| ||||||| | |||||||| |||| ||| |||||||    
T  12120165 agttaactaccgctaggttttttagtcatttgcttgtgtttccaagacatattggatgt 12120107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 11212761 - 11212716
Alignment:
Q  365 ttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  11212761 ttttttctataaatccctataaattgggcaatttctttagattttt 11212716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 1317663 - 1317703
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtt 169  Q
    |||||||||||||||  ||||||||||||||||||| ||||    
T  1317663 tagttaactaccgctgaattttttggtcatttccatttgtt 1317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 1727948 - 1728016
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| |||| |||||||||||||||||||    
T  1727948 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttt 1728016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 13627653 - 13627585
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| |||| |||||||||||||||||||    
T  13627653 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttt 13627585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 24694666 - 24694734
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| ||  |||||| ||||||||||||||||||||||||    
T  24694666 tttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttacattttt 24694734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 8367099 - 8367025
Alignment:
Q  118 aaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||| ||||||| |||| ||||||||| ||||    
T  8367099 aaaatcggtggtagttaactaccgct-gagtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaa 8367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 35924727 - 35924657
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactt 109  Q
    |||||||||||||| |||||| |||||||||| |||||| |||  |||||| ||||||||||||||||||||    
T  35924727 acatccattgtttcctagaaacatatggaaataaccaaacaca-tccagcgatagttaactaccattgactt 35924657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 12075924 - 12076042
Alignment:
Q  83 ccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataat 182  Q
    |||||||||||||||||||  ||||||  ||  |||||| |||| | |||||||| ||||| | |||||||||||||| | ||||||||||||| | | |    
T  12075924 ccagcggtagttaactaccgctgacttataactagaaaaccggcagcagttaactgccgcttggttttttggtcatttacttgtgtttctaagacacatt 12076023  T
Q  183 ggatgttaaaacaacaatt 201  Q
    | |||||| |||| |||||    
T  12076024 gaatgttagaacatcaatt 12076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 5506879 - 5507008
Alignment:
Q  66 aaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatg 165  Q
    |||| ||||||||||   ||||||||||||||| | | || |||  ||  |||||||||||||||||||| |||| ||  |||||||  |||||| || |    
T  5506879 aaataaccaaaaacatctcagcggtagttaactgcgactggcttataactagaaaatcggcggtagttaattaccactgaattttttaatcattttcacg 5506978  T
Q  166 tgtttctaagaaataatggatgttaaaaca 195  Q
    ||||||||| ||| ||||||||| ||||||    
T  5506979 tgtttctaaaaaacaatggatgtgaaaaca 5507008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 6706273 - 6706429
Alignment:
Q  38 acatccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaact 137  Q
    |||| |||||||||||| ||| | ||| |||| ||||||||||   |||||||||||||||||| |||||||  ||  | ||||| ||| ||||||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttataactaaaaaattggcagtagttaact 6706372  T
Q  138 accgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaaca 195  Q
    |||| | || ||||| |||||||   ||||||| ||||||| | | ||||| ||||||    
T  6706373 accg-ttgagttttttgtcatttttgtgtgtttttaagaaacactagatgtaaaaaca 6706429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 4639575 - 4639425
Alignment:
Q  32 gttttgacatccattgtttcttagaaatatatggaaattaccaaaaacacacca---gcggtagttaactaccattgactttaaagcagaaaatcggcgg 128  Q
    |||||||| | |||||||||||||||| | ||| |||| | ||||||||| |||   || ||||| ||||||| ||||||| |||||| | || ||  ||    
T  4639575 gttttgaccttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccagtggcagtagtcaactaccgttgacttcaaagcatacaaccgatgg 4639476  T
Q  129 tagttaactaccgc-tagattttttggtcatttccatgtgtttctaagaaa 178  Q
    || |||||||||||  || ||||||  |||||| |||||||||||||||||    
T  4639475 tatttaactaccgcggagttttttttatcattttcatgtgtttctaagaaa 4639425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 14613550 - 14613690
Alignment:
Q  39 catccattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaacta 138  Q
    ||||||||||||| |||||| | ||| |||| ||||||||||| ||| ||||||||| | ||   || |||  ||  |||||||||||||||||||||||    
T  14613550 catccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttataactagaaaatcggcggtagttaacta 14613649  T
Q  139 ccgctag--attttttggtcatttccatgtgtttctaagaaa 178  Q
     |||| |  ||||||||| |||| |||||| |||||| ||||    
T  14613650 acgctggttattttttgg-cattcccatgtatttctaggaaa 14613690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 23218598 - 23218530
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  23218598 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 23218530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 38397711 - 38397643
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  38397711 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 38397643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 5045220 - 5045145
Alignment:
Q  103 ttgactttaaagcagaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaa 178  Q
    ||||||| ||| |||||||| |  |||||||||||||||||| | ||||| |||||||| |||| | |||||||||    
T  5045220 ttgacttcaaaacagaaaattgatggtagttaactaccgctaaaatttttagtcatttctatgtatctctaagaaa 5045145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 614430 - 614475
Alignment:
Q  365 ttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||||| |||||||||| ||| ||||||||||||| ||||||    
T  614430 ttttttatataaatccctataaatttggcaatttctttagattttt 614475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 37169075 - 37169116
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  37169075 ttatataaacccctataaattgggcaatttctttacattttt 37169116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 6257425 - 6257493
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||  || ||||||| ||||||||||||||||||||||||    
T  6257425 tttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttacattttt 6257493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 25939302 - 25939360
Alignment:
Q  43 cattgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactacc 101  Q
    ||||||||| |||||| |||||||||  ||||||||||||| |||||||||||||||||    
T  25939302 cattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactacc 25939360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 34676984 - 34677074
Alignment:
Q  89 gtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgc-tagattttttggtcatttccatgtgtttctaagaaa 178  Q
    ||||||||||||| ||| |||  ||  ||||||||||||||| ||||||||||| ||| ||||||  ||||||||||||||||||| ||||    
T  34676984 gtagttaactaccgttggcttataactagaaaatcggcggtatttaactaccgcttagttttttttatcatttccatgtgtttctaggaaa 34677074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 34307052 - 34307113
Alignment:
Q  127 ggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgt 188  Q
    |||||||||||   ||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  34307052 ggtagttaactgttgctggattttttggtcatttccatgtatttctaagaaataatgaatgt 34307113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 35806907 - 35806839
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| |||||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  35806907 tttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 35806839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 41667915 - 41667870
Alignment:
Q  155 tcatttccatgtgtttctaagaaataatggatgttaaaacaacaat 200  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||    
T  41667915 tcattttcatgtgtttctaagaaacaatagatgttaaaacaacaat 41667870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 9040938 - 9041001
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataatggatgttaaaa 193  Q
    ||||||||||||||| || ||||| |||||||||||||||||||| |||| |||| |||| ||||    
T  9040938 tagttaactaccgct-gagtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaa 9041001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 22324709 - 22324641
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  22324709 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 22324641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 21525471 - 21525403
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||| ||||||||||||||||||    
T  21525471 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 21525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 42072541 - 42072473
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||| ||||||||||||||||||    
T  42072541 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 42072473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 21808997 - 21808879
Alignment:
Q  84 cagcggtagttaactaccattgactttaaagc-agaaaatcggcggtagttaactaccgctagattttttggtcatttccatgtgtttctaagaaataat 182  Q
    ||||||||||||||||||  || ||| | ||| |||||| |||| | ||||||||  |||||| |||||||||||||| | ||||||||||||| ||  |    
T  21808997 cagcggtagttaactaccgctggcttgatagctagaaaaccggcagcagttaactgacgctaggttttttggtcatttacttgtgtttctaagacatgtt 21808898  T
Q  183 ggatgttaaaacaacaatt 201  Q
    | |||| ||||||| ||||    
T  21808897 gaatgtcaaaacaataatt 21808879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 8950546 - 8950587
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  8950546 ttatataaatccctataaattgggcaatttctttacattttt 8950587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 26452918 - 26452971
Alignment:
Q  148 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 201  Q
    ||||||||||||| |||||||||||| ||||||||||||||  ||| |||||||    
T  26452918 tttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaatt 26452971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 13856212 - 13856144
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| |||||||||| ||||| ||||||||||||||||||    
T  13856212 tttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttacattttt 13856144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 21853310 - 21853242
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||||||||||||||||||||||    
T  21853310 tttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttacattttt 21853242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 26851253 - 26851283
Alignment:
Q  113 agcagaaaatcggcggtagttaactaccgct 143  Q
    |||||||||||||||||||||||||||||||    
T  26851253 agcagaaaatcggcggtagttaactaccgct 26851283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 23467536 - 23467577
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  23467536 ttatataaacccctataaattgggcaatttctttacattttt 23467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 29722793 - 29722745
Alignment:
Q  129 tagttaactaccgctagattttttggtcatttccatgtgtttctaagaaa 178  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| ||||    
T  29722793 tagttaactaccgttagatttttta-tcatttccatgtgtttctaggaaa 29722745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 40845959 - 40846000
Alignment:
Q  369 ttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  40845959 ttatataaacccctataaattgggcaatttctttacattttt 40846000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 5391570 - 5391502
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||||| ||||||||||||||||||    
T  5391570 tttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 5391502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 32352960 - 32352892
Alignment:
Q  342 tttcttgtttaaacctctattacttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||| |||| | |||| | ||| |||||| || ||||||| ||| ||||||||||||||||||||    
T  32352960 tttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttt 32352892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 54609 - 54564
Alignment:
Q  365 ttttttatattaatccctatatattgggcaatttctttacattttt 410  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||    
T  54609 ttttttatataaatccctataaattggacaatttctttacattttt 54564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 11447 - 11587
Alignment:
Q  44 attgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgct 143  Q
    |||||||| |||||| ||||| |||| ||||||||||  ||||| ||||||||||||    |||||  ||  |||||| || |||||||||||||  | |    
T  11447 attgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaaccgacggtagttaactattgtt 11546  T
Q  144 agattttttggtcatttccatgtgtttctaagaaataatgga 185  Q
    | | ||||||||||||| ||| | ||| ||||||| ||||||    
T  11547 a-agtttttggtcattttcatatatttttaagaaacaatgga 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 19184 - 19324
Alignment:
Q  44 attgtttcttagaaatatatggaaattaccaaaaacacaccagcggtagttaactaccattgactttaaagcagaaaatcggcggtagttaactaccgct 143  Q
    |||||||| |||||| ||||| |||| ||||||||||  ||||| ||||||||||||    |||||  ||  |||||| || |||||||||||||  | |    
T  19184 attgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaaccgacggtagttaactattgtt 19283  T
Q  144 agattttttggtcatttccatgtgtttctaagaaataatgga 185  Q
    | | ||||||||||||| ||| | ||| ||||||| ||||||    
T  19284 a-agtttttggtcattttcatatatttttaagaaacaatgga 19324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University