View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_4 (Length: 390)
Name: NF5665_low_4
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 48252322 - 48252632
Alignment:
| Q |
7 |
gtacttaattttttgaagcaaactcctaaaagagaaatgaattcaagctttcagatcattaaatatataaagtgaacaagtgacaatgttttagcgatga |
106 |
Q |
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| T |
48252322 |
gtacttaattttttgaagcaaactcctaaaacagaaatgaattcaagctttcagatcattaaatata---agtgaacaagtgacgatgttttagcgatga |
48252418 |
T |
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| Q |
107 |
caaaaacattattaccgcgaagttattgccgcttgtggctgggttggaaaactgactccatatttcaacattataaggaatttttcctaccaaatccggt |
206 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48252419 |
caaaaacattgttaccgcgaagttattgccgcttgtggctgg-ttggaaaactgactccatatttcaacattataaggaagttttcctaccaaatccggt |
48252517 |
T |
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| Q |
207 |
ggactatgcaaactagcggttcttcgtaggtttgtaagttgaactaaaagacagatattcctatgtgttccgttccaggttttacatacac---atttga |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
48252518 |
ggactatgcaaactagcggttcttcgtaggtttgtaagttgaactaaaagacagatattcctatgtgttccgttccagg-tttacatacacattatttga |
48252616 |
T |
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| Q |
304 |
cattatgttaaaagat |
319 |
Q |
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|||||||||||||||| |
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| T |
48252617 |
cattatgttaaaagat |
48252632 |
T |
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