View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_5 (Length: 386)
Name: NF5665_low_5
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 3155373 - 3155527
Alignment:
| Q |
115 |
ttcaagttccaaattcggaaccaaatcaacaacaaatccaatttacaaatcaatccaatggaaatcctgatttagctagagtctataaattaaaactaaa |
214 |
Q |
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| T |
3155373 |
ttcaagttcaaatttcggaaccaaatcaacaacaaatccaatttacaaatcaatccaatggaaatcctgatttagctagagtctataaattgaaactaaa |
3155472 |
T |
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| Q |
215 |
aagatcaaacaatggaggctaaagtagaaaaccaaattctttgagaggagaatag |
269 |
Q |
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| T |
3155473 |
aagatcaaacaatggaggctaaagtagaaaaccaaattctttgagaggagaatag |
3155527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 3155327 - 3155360
Alignment:
| Q |
84 |
ttacacttaataaaaaaggtgaacctcttgtttc |
117 |
Q |
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| T |
3155327 |
ttacacttaataaaaaaggtgaacctcttgtttc |
3155360 |
T |
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