View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_6 (Length: 384)
Name: NF5665_low_6
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 3862971 - 3863131
Alignment:
| Q |
45 |
gcatcaaactacatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaaaagtta |
144 |
Q |
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| T |
3862971 |
gcatcaaactaaatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaaaagtta |
3863070 |
T |
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| Q |
145 |
gaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatctacacag |
205 |
Q |
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| T |
3863071 |
gaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatctacacag |
3863131 |
T |
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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 231 - 376
Target Start/End: Original strand, 3863158 - 3863308
Alignment:
| Q |
231 |
gactcaactgataacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattc-----tcataa |
325 |
Q |
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| T |
3863158 |
gactcaactggtaacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattctcgtatcataa |
3863257 |
T |
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| Q |
326 |
tatactgctaaactaattgttatacacaagtgtgctatatatagtattatc |
376 |
Q |
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| T |
3863258 |
tatactgctaaactaatggttatacacaagtgtggtatatatagtattatc |
3863308 |
T |
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