View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_7 (Length: 370)
Name: NF5665_low_7
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 35383770 - 35383409
Alignment:
| Q |
13 |
agagaggaaaagaaaagtaaaaaccatttggctagttcctctgaaggtgctctagaattgtcattgaatggagagctcaatcctggagataacccaccaa |
112 |
Q |
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| T |
35383770 |
agagaagaaaagaaaagtaaaaaccatttggctagttcctttgaaggtgctctagaattgtcattgaatggagaactcaatcctggagataacccaccaa |
35383671 |
T |
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| Q |
113 |
aaattggtgatgaagtggcaggtgatgacatgtttgtgttgctcattggaactgatgtggttggtgtatttggtcctccagcaccactgaaaacattata |
212 |
Q |
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| T |
35383670 |
aaattggtgatgaagtggcaggtgatgacatgtttgtgttgctcattggaactgatgtggttggtgtatttggtcctccagcaccactgaaaacattata |
35383571 |
T |
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| Q |
213 |
ataaatcaaatagttagttaccattgatcct---------------------tcaatataaaattttgtaaggtaaaactgagaatg---aagaaaaagg |
288 |
Q |
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| T |
35383570 |
ataaatcaaatagttagttaccattgatcctttactccttgctatttaaggatcaatataaagttttgtaaggtaaaactgagaatgaaaaaaaaaaagg |
35383471 |
T |
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| Q |
289 |
tgctagtaaaacattgaaattttattatagtgtaataaccatataggtatgtgaccccatga |
350 |
Q |
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| T |
35383470 |
tgctagtaaaacattgaaattttattatagtgtgataaccatataggtatgtgaccccatga |
35383409 |
T |
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