View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5665_low_9 (Length: 358)
Name: NF5665_low_9
Description: NF5665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5665_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 29468532 - 29468183
Alignment:
| Q |
1 |
tcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtccaacctataaagtttttgag |
100 |
Q |
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| T |
29468532 |
tcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtccaacctataaagtttttgag |
29468433 |
T |
|
| Q |
101 |
catcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaannnnnnngtccttattacatgtcttcggcaagag |
200 |
Q |
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| T |
29468432 |
catcaacctcgaccaaaactaaaacactaccttatttctcgcacagctgaatcacaaagtatgtaatttttt-gtccttattacatgtcttcggcaagag |
29468334 |
T |
|
| Q |
201 |
aatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttcttgaacttctagtgtgtttt |
300 |
Q |
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| T |
29468333 |
aatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttcttgaacttctagtgtgtttt |
29468234 |
T |
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| Q |
301 |
taacaaacatatgcaatctaaacaatgtgtagtcgctctgtagtataatat |
351 |
Q |
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| T |
29468233 |
taacaaacatatgcaatctaaacaatgtgtagtcgctctgtagtataatat |
29468183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 69 - 342
Target Start/End: Complemental strand, 14999603 - 14999333
Alignment:
| Q |
69 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaann |
168 |
Q |
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| T |
14999603 |
taccagcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaactaaaaaactacattatttgttgcacagctgaatcata--gttttt---- |
14999512 |
T |
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| Q |
169 |
nnnnngtccttattacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcg------atgttgtcttcatgatt |
262 |
Q |
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|| || |||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
14999511 |
-tttggttctgattacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttcgtttcctcggcctcaatgttgtcttcatgatc |
14999413 |
T |
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| Q |
263 |
aataacgcttgttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctgta |
342 |
Q |
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| T |
14999412 |
aatagcgcttgttccttcttgaacttctagcgtgtctttgacaaacatatacaatctcaacattgtgtagtcgctctgta |
14999333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 13636992 - 13636866
Alignment:
| Q |
181 |
ttacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcatttcctcgatgttgtcttcatgattaataacgcttgttccttc |
280 |
Q |
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||||||||||| || ||||||||||||||||| | ||||||| | |||||||| | ||||||| |||||||||||||| ||| ||||||| ||||||| |
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| T |
13636992 |
ttacatgtctttggaaagagaatcacacaattttactcttttatgaattgttttccttttcctcagtgttgtcttcatgagtaacaacgcttattccttc |
13636893 |
T |
|
| Q |
281 |
ttgaacttctagtgtgtttttaacaaa |
307 |
Q |
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| T |
13636892 |
ttgaacttctagtgagtttttaacaaa |
13636866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 14741264 - 14741363
Alignment:
| Q |
241 |
cctcgatgttgtcttcatgattaataacgcttgttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctg |
340 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | | ||||||||||||||| |
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| T |
14741264 |
cctcaatgttgtcttcatgagtagcaacgcttgttccttcttgaacttctagtgaatttttaacaaacatatacaatctccatactgtgtagtcgctctg |
14741363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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