View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5666-Insertion-2 (Length: 956)
Name: NF5666-Insertion-2
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666-Insertion-2 |
 | |
|
| [»] chr3 (42 HSPs) |
| |
|
| [»] scaffold0257 (2 HSPs) |
| | |
|
| [»] scaffold0922 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 934; Significance: 0; HSPs: 42)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 934; E-Value: 0
Query Start/End: Original strand, 7 - 956
Target Start/End: Original strand, 28507719 - 28508668
Alignment:
| Q |
7 |
acttatgtctttaaatcttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507719 |
acttatgtctttaaatcttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagat |
28507818 |
T |
|
| Q |
107 |
gtaatcatttccaaaaatgcaattaactctgcggttcctttcagaaaagagaaaatattaatgtgcaataactagtacggcacatttgcaaagagattaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507819 |
gtaatcatttccaaaaatgcaattaactctgcggttcctttcagaaaagagaaaatattaatgtgcaataactagtacggcacatttgcaaagagattaa |
28507918 |
T |
|
| Q |
207 |
accaaatatagattcttagaggcttggttcatccatcatatgtatttcatatcttcatctgttgtatggaaaatccaataaaataacttcatcaatgtaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507919 |
accaaatatagattcttagaggcttggttcatccatcatatgtatatcatatcttcatctgttgtatggaaaatccaataaaataacttcatcaatgtaa |
28508018 |
T |
|
| Q |
307 |
catattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508019 |
catattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaa |
28508118 |
T |
|
| Q |
407 |
taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508119 |
taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga |
28508218 |
T |
|
| Q |
507 |
taggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaac |
606 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508219 |
taggggcatgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaac |
28508318 |
T |
|
| Q |
607 |
ttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgg |
706 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508319 |
ttccatttgttcgcttaaaatgcctatcttcaatcgcaagacttcaacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgg |
28508418 |
T |
|
| Q |
707 |
gacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508419 |
gacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatt |
28508518 |
T |
|
| Q |
807 |
tagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattact |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508519 |
tagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattact |
28508618 |
T |
|
| Q |
907 |
aagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaaacag |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508619 |
aagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaaacag |
28508668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 493 - 952
Target Start/End: Original strand, 26126275 - 26126734
Alignment:
| Q |
493 |
agtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacc |
592 |
Q |
| |
|
|||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||| |
|
|
| T |
26126275 |
agtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccaca |
26126374 |
T |
|
| Q |
593 |
tgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaatttt |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| ||||||||| |||| || | |
|
|
| T |
26126375 |
tgttcactaagaacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttct |
26126474 |
T |
|
| Q |
693 |
gcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtat |
792 |
Q |
| |
|
|| ||||||| || |||| || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
26126475 |
ttaatacatcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaa |
26126574 |
T |
|
| Q |
793 |
taactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaaccc |
892 |
Q |
| |
|
||||||| |||||| ||||||| | ||||||||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
26126575 |
taactcctcaaattcagagtggaatgaccccaatacttccaacacactgtgggttttgagaaatttcaacagttcagctagtaaattgtaagcacaaccc |
26126674 |
T |
|
| Q |
893 |
ttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||||||||||||||||||| |||||| || ||| | |||||||||| |||||||| |||| |
|
|
| T |
26126675 |
ttgtatctattactaagtgaagtgtcttttaaacggacagaaggatgcttaacaaagaaa |
26126734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 496 - 952
Target Start/End: Original strand, 26176329 - 26176785
Alignment:
| Q |
496 |
ctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgt |
595 |
Q |
| |
|
||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||| ||| |
|
|
| T |
26176329 |
ctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccacatgt |
26176428 |
T |
|
| Q |
596 |
tcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgca |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| ||||||||| |||| || | | |
|
|
| T |
26176429 |
tcactaagaacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttcttta |
26176528 |
T |
|
| Q |
696 |
aggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaa |
795 |
Q |
| |
|
| ||||||| || |||| || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || |||||||||| ||| |
|
|
| T |
26176529 |
atacatcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataa |
26176628 |
T |
|
| Q |
796 |
ctccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttg |
895 |
Q |
| |
|
|||| |||||| ||||||| | || |||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26176629 |
ctcctcaaattcagagtggaatgagcccaatacttccaacacactgtgggttttgaggaatttcaacagttcagctagtaaattgtaagcacaacccttg |
26176728 |
T |
|
| Q |
896 |
tatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||||||| |||||| || ||| | |||||||||| |||||||| |||| |
|
|
| T |
26176729 |
tatctattactaagtgaagtgtctttaaaacggacagaaggatgcttaacaaagaaa |
26176785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 489 - 952
Target Start/End: Original strand, 26231838 - 26232301
Alignment:
| Q |
489 |
atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc |
588 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
26231838 |
atatagtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaatagcttgagaggatgtcaattgatgcttaagaacttc |
26231937 |
T |
|
| Q |
589 |
cacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaa |
688 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || || ||||| || || |||||||| |||| ||||||||| |||| |
|
|
| T |
26231938 |
cacatgttcactaagaacttccatttgttcactcaaaatgcgtatcttcaagcgtaaaacttcaacttctttggtaacatgttccttggaatccaatagt |
26232037 |
T |
|
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|| | || ||||||| || ||| || |||||| |||||| |||||| || |||||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
26232038 |
ttctttaatacatcttgagattcttgcatatcaggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatctt |
26232137 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| ||||||| |||||| ||||||| | || |||||||||||||||| |||||| |||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26232138 |
gtaataactcctcaaattcagagtggaatgagcccaatacttccaacacactatgagttttgaggaatttcagtagttcagctaataaattgtaggcaca |
26232237 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||| | ||||||||||||||||||| |||| |
|
|
| T |
26232238 |
acccttgtatctattactaagtgaagtgtcttttaaacggacagaaggattcttaacaaagaaa |
26232301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 614 - 952
Target Start/End: Original strand, 26109619 - 26109957
Alignment:
| Q |
614 |
tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacactt |
713 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || |||| |
|
|
| T |
26109619 |
tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatactt |
26109718 |
T |
|
| Q |
714 |
ttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtg |
813 |
Q |
| |
|
||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||| |
|
|
| T |
26109719 |
gtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccataaattcagagtg |
26109818 |
T |
|
| Q |
814 |
gcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgca |
913 |
Q |
| |
|
| | || || ||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26109819 |
gtatgatcctaattcttccaatatattatgggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaa |
26109918 |
T |
|
| Q |
914 |
gtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||||| || ||| | |||||||||| |||||||| |||| |
|
|
| T |
26109919 |
gtgtcttttaaacggacagaaggatgcttaacaaagaaa |
26109957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 614 - 952
Target Start/End: Original strand, 26203911 - 26204249
Alignment:
| Q |
614 |
tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacactt |
713 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || |||| |
|
|
| T |
26203911 |
tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatcttgtgatactt |
26204010 |
T |
|
| Q |
714 |
ttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtg |
813 |
Q |
| |
|
||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||| |
|
|
| T |
26204011 |
gtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccagaaattcagagtg |
26204110 |
T |
|
| Q |
814 |
gcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgca |
913 |
Q |
| |
|
| | || || ||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26204111 |
gaatgagcctaatacttccaatacattatgggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgaa |
26204210 |
T |
|
| Q |
914 |
gtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||||| || ||| | |||||||||| |||||||| |||| |
|
|
| T |
26204211 |
gtgtcttttaaacggacagaaggatgcttaacaaagaaa |
26204249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 268 - 704
Target Start/End: Original strand, 28478847 - 28479260
Alignment:
| Q |
268 |
ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc |
367 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
28478847 |
ttgtatggaagatacagtaaaataacttcatcaatgtaacatat-----aacaatcaataatagttttaaatacacaaacatagtaagaatctttagttc |
28478941 |
T |
|
| Q |
368 |
acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaag-------gttcccacaatgaaaagcataacaaaggttcc |
460 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28478942 |
actttggatgagaaacgacgaaacgttatacccaagaaatgaacaatattgaagtacaaaggttctcagttcccacaatgaaaagcataacaaag----t |
28479037 |
T |
|
| Q |
461 |
cacaatgatggaatataattacttgaagatatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcag |
560 |
Q |
| |
|
||||||| |||| ||||||| ||| ||||| |||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28479038 |
agcaatgatagaattaaattactagaaaatataatctaatagccgaaaggggcacttaaaaccgcctcttgttgaatgatagtctccaaaacagcttcag |
28479137 |
T |
|
| Q |
561 |
aggatgtcaattgttgcttaagatcttccacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatcctt |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
28479138 |
aggatgtcaattgttgcttaagatcttccacat---------------------gttgacttaaaatgcctatcttcaaacgcaacacttcaacatcctt |
28479216 |
T |
|
| Q |
661 |
ggtaacctgttgcttggaatctaataaattttgcaaggcatctt |
704 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
28479217 |
ggtaacctgttgctttgaatccaataatttttgcaaggcatctt |
28479260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 735 - 952
Target Start/End: Original strand, 28479264 - 28479481
Alignment:
| Q |
735 |
gcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaa |
834 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28479264 |
gcctctccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaa |
28479363 |
T |
|
| Q |
835 |
catactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaa |
934 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||||| |
|
|
| T |
28479364 |
cacactatgggtttcaaggaatttcaatagttcggctagtaaattgtaggcacaacccttgtatctattactcagtgcaatgtcctttaaacgaacagaa |
28479463 |
T |
|
| Q |
935 |
ggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
28479464 |
ggattcctaacaaggaaa |
28479481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 407 - 952
Target Start/End: Complemental strand, 28137339 - 28136819
Alignment:
| Q |
407 |
taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga |
506 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||||||||||||| | |||||||| |||| || |||||||| ||||||||||||| || | |
|
|
| T |
28137339 |
taaaaaatattgaagaacaaaggttcccacaatgaaaagcataacaaag----cagcaatgatgaaataaaagtacttgaaaatatagtctaataaccaa |
28137244 |
T |
|
| Q |
507 |
taggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaac |
606 |
Q |
| |
|
|||| |||| |||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28137243 |
taggtgcacttaaaaccgcctcttgttgaattatattcttcaaaacagctttagaggatgtcaattgatgcttaagatc--------------------- |
28137165 |
T |
|
| Q |
607 |
ttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgg |
706 |
Q |
| |
|
||||| |||| ||||||||| ||||||| || |||| ||||| || |||||||||| |||||||||||||| ||||| ||||||| ||| ||||| |
|
|
| T |
28137164 |
ttccacatgttgacttaaaatctctatctttaaatgcaacacttcaacttccttggtaatttgttgcttggaatccaataatttttgcatggcgtcttga |
28137065 |
T |
|
| Q |
707 |
gacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatt |
806 |
Q |
| |
|
|| | || ||| |||||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||| |
|
|
| T |
28137064 |
gatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagatccacaaatt |
28136965 |
T |
|
| Q |
807 |
tagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattact |
906 |
Q |
| |
|
||||||||| || || ||||| ||||| | |||||| |||||||||||||||||||| || || | ||| ||||| |||||||||||| ||||||||| |
|
|
| T |
28136964 |
cagagtggcatgagcctaatacatccaagacactatgagtttcaaggaatttcaatagctctgccaataagttgtaagcacaacccttgaatctattacg |
28136865 |
T |
|
| Q |
907 |
aagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||| | |||| || ||| ||||||||||||| |||||||||||| |
|
|
| T |
28136864 |
cagtgaattgtcttttaaacgaacagaaggatttttaacaaggaaa |
28136819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 489 - 952
Target Start/End: Original strand, 26138414 - 26138841
Alignment:
| Q |
489 |
atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc |
588 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
26138414 |
atatagtctaatagccaataggggcactcaaaaccacctcttgttgaatgatacgctccaaaacaacttcagaggatgtcaactgttgcttaagatc--- |
26138510 |
T |
|
| Q |
589 |
cacctgttcactaagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaa |
688 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26138511 |
------------------ttccacatgttgacttaaaatgcctatcttcaagtgcaacaattcaacatccttggtaacctgttgcttgtaatccaataat |
26138592 |
T |
|
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|| ||| ||| | || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
26138593 |
ttctgc-------ctt--------tcaatatcaggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatctt |
26138677 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||||||||||| ||||||| | | |||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
26138678 |
gtaataactccacaaattcagagtggaatgtgcccaatacttccaatatactatgggttttgaggaatttcaatagtttagctagtacgttgtaggcaca |
26138777 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||| |||||||||||| |||||| || ||| | |||||||| |||||||| |||| |
|
|
| T |
26138778 |
acccttgtatgtattactaagtgaagtgtcttttaaacagatagaaggatgcttaacaaagaaa |
26138841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28061260 - 28061078
Alignment:
| Q |
268 |
ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc |
367 |
Q |
| |
|
||||||| || || || |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
28061260 |
ttgtatgaaagattcagtaaaataacttcatcaatgtaacata-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc |
28061166 |
T |
|
| Q |
368 |
acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28061165 |
acttcggatgagaaacgacgaaacgttacaccgaagaaatgaacaatattgaagtacaaaggttcccacaatggaaagcataacaaag |
28061078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28071685 - 28071503
Alignment:
| Q |
268 |
ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc |
367 |
Q |
| |
|
||||||| || || || |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
28071685 |
ttgtatgaaagattcagtaaaataacttcatcaatgtaacata-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc |
28071591 |
T |
|
| Q |
368 |
acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28071590 |
acttcggatgagaaacgacgaaacgttacaccgaagaaatgaacaatattgaagtacaaaggttcccacaatggaaagcataacaaag |
28071503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28164508 - 28164326
Alignment:
| Q |
268 |
ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc |
367 |
Q |
| |
|
||||||| || || || ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
28164508 |
ttgtatgaaagattcagtaaaataacttcatcaatgtaacatg-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc |
28164414 |
T |
|
| Q |
368 |
acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
28164413 |
acttcggatgagaaacgacgaaacgttacacccaagaaatgaacaatattgaagtacaaatgttcccacaatggaaagcataacaaag |
28164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 689 - 952
Target Start/End: Original strand, 17743873 - 17744136
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || ||||||||||||||||| | ||||||||||||||||| | |||||||||| ||| |||||| |||||| |
|
|
| T |
17743873 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt |
17743972 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| ||||| || || || || || ||||||| |||| | |||| ||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
17743973 |
gtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagctaggcaattgtaggcata |
17744072 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || ||||||||| ||| ||| ||||||| |||||||| |||| |
|
|
| T |
17744073 |
acccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaacaaagaaa |
17744136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 689 - 952
Target Start/End: Original strand, 19045193 - 19045456
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || ||||||||||||||||| | ||||||||||||||||| | |||||||||| ||| |||||| |||||| |
|
|
| T |
19045193 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatctt |
19045292 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| ||||| || || || || || ||||||| |||| | |||| ||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
19045293 |
gtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagctaggcaattgtaggcata |
19045392 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || ||||||||| ||| ||| ||||||| |||||||| |||| |
|
|
| T |
19045393 |
acccttgtatctgttactcaatgaagtgtcctttaaaagaattgaaggatgcttaacaaagaaa |
19045456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 689 - 952
Target Start/End: Complemental strand, 28057950 - 28057687
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || |||| |||||| |||| | |||| | |||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
28057950 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28057851 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| |||||||| || || || || ||||||| |||||| |||| |||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
28057850 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcata |
28057751 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || ||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
28057750 |
acccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaagaaa |
28057687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 689 - 952
Target Start/End: Complemental strand, 28068375 - 28068112
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || |||| |||||| |||| | |||| | |||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
28068375 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28068276 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| |||||||| || || || || ||||||| |||||| |||| |||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
28068275 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcata |
28068176 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || ||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
28068175 |
acccttgtatctgttactcaatgaagtgtccttcaaacgaacagaaggatgtttaacaaagaaa |
28068112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 689 - 952
Target Start/End: Complemental strand, 28187424 - 28187161
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || |||| ||||||||||| | |||| | |||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
28187424 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatctt |
28187325 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| |||||||| || || || || ||||||| |||||| |||| |||||||||||||| |||||||| | ||||||||| | |
|
|
| T |
28187324 |
gtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcagttgtaggcata |
28187225 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || |||||| || ||| |||| ||||||| |||||||| |||| |
|
|
| T |
28187224 |
acccttgtatctgttactcaatgaagtgtcgtttaaaagaaccgaaggatgcttaacaaagaaa |
28187161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 670 - 952
Target Start/End: Original strand, 8538459 - 8538741
Alignment:
| Q |
670 |
ttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaa |
769 |
Q |
| |
|
||||| |||||| |||| |||||||| |||| ||| || | || || |||||||||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
8538459 |
ttgctgggaatccaatatcttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaa |
8538558 |
T |
|
| Q |
770 |
ccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcag |
869 |
Q |
| |
|
||| | | ||| ||||||||| |||||| ||||||| ||| |||| || || || || ||||||| | |||| |||| |||||||||||||| |||| |
|
|
| T |
8538559 |
ccacattttcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacaatatgagtttggaggaatttcaatagctcag |
8538658 |
T |
|
| Q |
870 |
ctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||| | ||||||||| ||||||||||||| ||||| |||| || |||| | ||| ||| ||||||| |||||||||||| |
|
|
| T |
8538659 |
ctagacagttgtaggcataacccttgtatctgttacttagtgaagcgtccgttaaaagaattgaaggatggttaacaaggaaa |
8538741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 740 - 952
Target Start/End: Original strand, 27430396 - 27430608
Alignment:
| Q |
740 |
tcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatac |
839 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| || ||| ||||||||| |||||| ||||||| |||||||| || || | || ||||||| | |
|
|
| T |
27430396 |
tcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaacacat |
27430495 |
T |
|
| Q |
840 |
tatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggatt |
939 |
Q |
| |
|
|||| | || |||||||||||||| |||||||| | ||||||||| ||||||||||||| ||||| | || || |||||| |||||||||||||||| |
|
|
| T |
27430496 |
tatgtggttggaggaatttcaatagctcagctaggcagttgtaggcataacccttgtatctgttactcaatgaagggtcctttaaatgaacagaaggatg |
27430595 |
T |
|
| Q |
940 |
cttaacaaggaaa |
952 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27430596 |
cttaacaaggaaa |
27430608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 689 - 951
Target Start/End: Complemental strand, 11421989 - 11421727
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || ||||||||||||||||| | ||||||||||||||||| || || |||||| ||| || ||| |||||| |
|
|
| T |
11421989 |
ttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaaggaaatctacgcacatctt |
11421890 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
|||||||||| |||||| |||||| | || || || || || |||| ||||||||| | |||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
11421889 |
gtattaactcaacaaatgtagagtttcttgaacctaacacgtctaacacactatgggtctggaggaatttcaatagctcagctaggcaattgtaggcata |
11421790 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaa |
951 |
Q |
| |
|
|||||||||||| |||| | || ||||||| | | | ||||||| |||| |||||||||||| |
|
|
| T |
11421789 |
acccttgtatctgctactcaatgaagtgtcccttagaagaacagacggatgcttaacaaggaa |
11421727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 668 - 948
Target Start/End: Complemental strand, 27777327 - 27777047
Alignment:
| Q |
668 |
tgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaa |
767 |
Q |
| |
|
||||||| |||||| |||| ||||| || ||| |||| || | || ||| |||| ||||||||| || | |||||||||||||||||||| ||||||| |
|
|
| T |
27777327 |
tgttgctgggaatccaatagtttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaa |
27777228 |
T |
|
| Q |
768 |
aaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttc |
867 |
Q |
| |
|
||||| | ||||| ||||||||| |||||| |||| | |||| ||| || || || || ||||||| ||||||| ||| |||||||||||||| || |
|
|
| T |
27777227 |
aaccacatctgcgtacatcttgtaataactcatcaaactcagagcggcttgaacctaacacatccaacacactatggttttggaggaatttcaatagctc |
27777128 |
T |
|
| Q |
868 |
agctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaag |
948 |
Q |
| |
|
||| || | ||||||| | ||| ||||||||||||||| |||| ||||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
27777127 |
agcaagacagttgtaggaataactcttgtatctattactcagtgaagtgtccctcaaaagaacagaaggattgttatcaag |
27777047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 600 - 781
Target Start/End: Complemental strand, 27357095 - 27356914
Alignment:
| Q |
600 |
taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc |
699 |
Q |
| |
|
||||| |||||| |||| |||||||||| |||| ||||| ||||| ||||| || || |||| || |||||||||||||| || | |||||||| || |
|
|
| T |
27357095 |
taagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc |
27356996 |
T |
|
| Q |
700 |
atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc |
781 |
Q |
| |
|
|||||| || |||||||| || | ||||||||| || || ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27356995 |
atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc |
27356914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 726 - 951
Target Start/End: Complemental strand, 27920935 - 27920710
Alignment:
| Q |
726 |
acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaa |
825 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| |||||||| || || || |
|
|
| T |
27920935 |
acaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggcttgaacctaa |
27920836 |
T |
|
| Q |
826 |
tacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaa |
925 |
Q |
| |
|
|| |||||| |||||| |||| |||||| |||||| |||||||| | ||||||| | ||||||||||||| |||| |||| ||||||| | | | |
|
|
| T |
27920835 |
cacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaataacccttgtatctgctactcagtgaagtgtcccttaga |
27920736 |
T |
|
| Q |
926 |
tgaacagaaggattcttaacaaggaa |
951 |
Q |
| |
|
|||| ||||||| |||||||||||| |
|
|
| T |
27920735 |
agaactgaaggatgcttaacaaggaa |
27920710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 719 - 951
Target Start/End: Complemental strand, 28152387 - 28152155
Alignment:
| Q |
719 |
tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacg |
818 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||| ||||||||||| ||| || ||| ||||||||| |||||| ||||||| ||||| || | |
|
|
| T |
28152387 |
tcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatcttgtaataactcaacaaattcagagttgcttg |
28152288 |
T |
|
| Q |
819 |
accccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtc |
918 |
Q |
| |
|
| || || || ||||||| |||||| |||| ||||||||||||||| || ||||| ||||||||| ||||||||||||| |||| | || |||||| |
|
|
| T |
28152287 |
aacctaacacatccaacacactatgagtttgaaggaatttcaatagctctgctaggctgttgtaggcataacccttgtatctgctactcaatgaagtgtc |
28152188 |
T |
|
| Q |
919 |
cttcaaatgaacagaaggattcttaacaaggaa |
951 |
Q |
| |
|
| | | | |||| ||||||| |||||||||||| |
|
|
| T |
28152187 |
ccttagaagaactgaaggatgcttaacaaggaa |
28152155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 489 - 576
Target Start/End: Original strand, 26203828 - 26203915
Alignment:
| Q |
489 |
atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttg |
576 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26203828 |
atatagtctaatagccaataggggaactgaaaaccacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaactgttg |
26203915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 689 - 952
Target Start/End: Complemental strand, 28163414 - 28163151
Alignment:
| Q |
689 |
ttttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatctt |
788 |
Q |
| |
|
|||||||| |||||||| || |||| || |||| |||||||||||| | || | | |||||||||| ||||||| ||| ||| ||||| ||||||| |
|
|
| T |
28163414 |
ttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaaccattccttatgaaatggaaatctgcgtgcatctt |
28163315 |
T |
|
| Q |
789 |
gtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcaca |
888 |
Q |
| |
|
||| |||||| ||||||| |||||||| || || || || ||||||| |||||| |||| |||||||||||||| || ||||| ||||||||| | | |
|
|
| T |
28163314 |
gtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctccgctagacaattgtaggtata |
28163215 |
T |
|
| Q |
889 |
acccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||||||||| ||||| | || |||||| || ||| |||| |||||| |||||||| |||| |
|
|
| T |
28163214 |
acccttgtatctgttactcaatgaagtgtcgtttaaaagaaccaaaggatgcttaacaaagaaa |
28163151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 489 - 587
Target Start/End: Original strand, 26109519 - 26109617
Alignment:
| Q |
489 |
atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatctt |
587 |
Q |
| |
|
||||| |||||||||| |||||||| | |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
26109519 |
atataatctaatagccaataggggcccttaaaaccacctcttgttgaatgatactctccaagaaagcttcagaggatgtcaattgttgattaagttctt |
26109617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 671 - 952
Target Start/End: Complemental strand, 28038295 - 28038014
Alignment:
| Q |
671 |
tgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaac |
770 |
Q |
| |
|
|||| |||||| |||| |||||||| |||| ||| || | ||||| |||||||||||||| ||| | || |||||||| |||||||| ||||| |||| |
|
|
| T |
28038295 |
tgctgggaatccaatagcttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaac |
28038196 |
T |
|
| Q |
771 |
caaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagc |
870 |
Q |
| |
|
| | |||||| ||||||||| ||||| ||||||| || ||||| || || || || ||||||| |||||| |||| |||||||||||||| || | |
|
|
| T |
28038195 |
tacatctgcgcacatcttgtaacaactcaacaaattcagtgtggcttgaacctaacacatccaacacactatgcgtttggaggaatttcaatagatcgac |
28038096 |
T |
|
| Q |
871 |
tagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||| | ||||| ||| ||| ||||||||| ||||| | | ||||||||| ||| || ||||||||| |||||||| |||| |
|
|
| T |
28038095 |
taggcagttgtaagcataactcttgtatcttttactcaattaagtgtcctttaaacgaccagaaggatgcttaacaaagaaa |
28038014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 784 - 952
Target Start/End: Original strand, 18078689 - 18078857
Alignment:
| Q |
784 |
atcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtag |
883 |
Q |
| |
|
|||||||| |||||| ||||||| ||| |||| || || || || ||||||| | |||| |||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
18078689 |
atcttgtaataactcaacaaattcagaatggcttgaacctaacacatccaacacattatgcgtttggaggaatttcaatagctcagctaggcaattgtag |
18078788 |
T |
|
| Q |
884 |
gcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||| ||||||||||||| ||||| | || ||||||||| || |||| |||||||||||||||| |||| |
|
|
| T |
18078789 |
gcataacccttgtatctgttactcaatgaagtgtcctttaagagaactgaaggattcttaacaaagaaa |
18078857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 630 - 952
Target Start/End: Original strand, 27458131 - 27458453
Alignment:
| Q |
630 |
ctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcaggaaacaa |
729 |
Q |
| |
|
||||||| || ||||| ||||| || ||||||| || |||||||||||||| || | ||||| || ||| ||| || |||| ||| || | |||||| |
|
|
| T |
27458131 |
ctatcttaaaacgcaacacttcaacttccttggagacttgttgcttggaatccaacagtttttgaaattcattttgagagacttgtatatccgaaaacaa |
27458230 |
T |
|
| Q |
730 |
agcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatact |
829 |
Q |
| |
|
|| || || || | || |||||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||||| ||| || ||||| || |
|
|
| T |
27458231 |
tgcacgtctttcgagactatccaaccaagccttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacaca |
27458330 |
T |
|
| Q |
830 |
tccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaa |
929 |
Q |
| |
|
|| |||| ||||||||||| ||| |||| || || ||||| || | ||| ||| ||||||||||||||||||| |||| |||||||| ||| ||| |
|
|
| T |
27458331 |
tcaaacacactatgggtttgaagaaattgtaacagctcagcgagacagccgtaagcataacccttgtatctattactcagtgatgtgtcctttaaaagaa |
27458430 |
T |
|
| Q |
930 |
cagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
27458431 |
gtgaagggtgcttaacaaggaaa |
27458453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 726 - 900
Target Start/End: Complemental strand, 27954904 - 27954730
Alignment:
| Q |
726 |
acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaa |
825 |
Q |
| |
|
|||||||| || | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| |||||||| || || || |
|
|
| T |
27954904 |
acaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggcttgaacctaa |
27954805 |
T |
|
| Q |
826 |
tacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatct |
900 |
Q |
| |
|
|| |||||| |||||| |||| |||||| |||||| |||||||| | ||||||| | ||||||||||||| |
|
|
| T |
27954804 |
cacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaataacccttgtatct |
27954730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 28152555 - 28152497
Alignment:
| Q |
530 |
tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc |
588 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28152555 |
tgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagatcttc |
28152497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 28680491 - 28680557
Alignment:
| Q |
530 |
tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt |
596 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
28680491 |
tgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatcttccacatgtt |
28680557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 28478586 - 28478649
Alignment:
| Q |
187 |
cacatttgcaaagagattaaaccaaatatagattcttagaggcttggttcatccatcatatgta |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| |
|
|
| T |
28478586 |
cacatttgcaaagagattaaaccaaatatagattcctagaggctcggttcaaacatcatgtgta |
28478649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 8538345 - 8538411
Alignment:
| Q |
530 |
tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt |
596 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
8538345 |
tgttgaatgatagtctccaaaatagcttcagaaactgtcaattgttgcttaagatcttccacatgtt |
8538411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 532 - 596
Target Start/End: Complemental strand, 27921108 - 27921044
Alignment:
| Q |
532 |
ttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt |
596 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
27921108 |
ttgaatgatagtctccaaaacatattcagaagatgtcaattgatgcttaagatcttccacatgtt |
27921044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 27357149 - 27357083
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
27357149 |
cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac |
27357083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 27458047 - 27458113
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
27458047 |
cctctttttgaataatactcttcaaaacagtctccgaggatgtcaattgatgcttaagatcttccac |
27458113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 733 - 791
Target Start/End: Complemental strand, 8549768 - 8549710
Alignment:
| Q |
733 |
gcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgta |
791 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
8549768 |
gcgcatctcaacacgatccaaccaatccttatcaaaaccacatttgcgcacatcttgta |
8549710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 793 - 906
Target Start/End: Complemental strand, 30993999 - 30993886
Alignment:
| Q |
793 |
taactccacaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaaccc |
892 |
Q |
| |
|
|||||| ||||||| |||||||| || || || || ||||||| || ||| |||| |||||||||||||| |||||||| | ||||||||| ||||| |
|
|
| T |
30993999 |
taactcaacaaattcagagtggcttgaacctaacacatccaacacacaatgcgtttggaggaatttcaatagatcagctagacagttgtaggcataaccc |
30993900 |
T |
|
| Q |
893 |
ttgtatctattact |
906 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
30993899 |
ttatatctgttact |
30993886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 591
Target Start/End: Complemental strand, 27777440 - 27777383
Alignment:
| Q |
534 |
gaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| | |||||||| ||||||| || ||||| ||||| ||||||||||||||||| |
|
|
| T |
27777440 |
gaatgagagtctccaaatcagcttctgaagatgttaattgatgcttaagatcttccac |
27777383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 424 - 905
Target Start/End: Original strand, 8692145 - 8692601
Alignment:
| Q |
424 |
caaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccgataggggcacgtaaaact |
523 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | || |||| |||| || ||| ||| |||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
8692145 |
caaaggttcccacaatgaaaagtataacaaagtagc----aaagatgaaatagaagtacaagaaaatatagtctaatagccaataagggcacttaaaact |
8692240 |
T |
|
| Q |
524 |
acctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaacttccatttgttcactta |
623 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||| ||| |||||||||| ||||||||||| ||||| ||| | ||||| |
|
|
| T |
8692241 |
gcctcttgttgaattatattcttcaaaacagctttggagcatgtcaattgatgcttaagatcctccacatgt---------------------tgactta |
8692319 |
T |
|
| Q |
624 |
aaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatcttgggacacttttatttcagg |
723 |
Q |
| |
|
|||| |||||||||| |||| ||||| || |||||||||||||||||||||||||| ||||| |||||| ||| ||||| || | || ||| ||||| |
|
|
| T |
8692320 |
aaatctctatcttcaaatgcaacacttcaacttccttggtaacctgttgcttggaatccaataatgtttgcatggcgtcttgcgatatttgtatatcagg |
8692419 |
T |
|
| Q |
724 |
aaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgacccc |
823 |
Q |
| |
|
||||| ||| || || || |||| |||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||||| || || |
|
|
| T |
8692420 |
aaacatagcccgtctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaacct |
8692519 |
T |
|
| Q |
824 |
aatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattac |
905 |
Q |
| |
|
||||| ||||| | |||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
8692520 |
aatacatccaagacactatgagtttcaaggaatttcaatagctcagccagtaagttgtaggcacaacccttgaatctattac |
8692601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 93; Significance: 9e-45; HSPs: 2)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 720 - 952
Target Start/End: Complemental strand, 19834 - 19602
Alignment:
| Q |
720 |
caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga |
819 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||||| | ||||||||||||| | ||||| ||||||||| |||||| ||||||| |||||||| || |
|
|
| T |
19834 |
caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttga |
19735 |
T |
|
| Q |
820 |
ccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtcc |
919 |
Q |
| |
|
|| || || ||||||| |||||| |||| |||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||| | || ||||||| |
|
|
| T |
19734 |
acctaacacatccaacacactatgagtttggaggaatttcaatagctcagctaggcaattgtaggcataacccttgtatctgttactcaatgaagtgtcc |
19635 |
T |
|
| Q |
920 |
ttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| |
|
|
| T |
19634 |
ttcaaacgaacagaaggatgtttaacaaagaaa |
19602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 585
Target Start/End: Complemental strand, 19966 - 19906
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatc |
585 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
19966 |
cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatc |
19906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 600 - 919
Target Start/End: Complemental strand, 22401009 - 22400690
Alignment:
| Q |
600 |
taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc |
699 |
Q |
| |
|
||||| |||||| |||| |||||||||| |||| ||||| ||||| ||||| || || |||| || |||||||||||||| || | |||||||| || |
|
|
| T |
22401009 |
taagatcttccacatgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc |
22400910 |
T |
|
| Q |
700 |
atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactcc |
799 |
Q |
| |
|
|||||| || |||||||| || | ||||||||| || || ||||||| |||||||||||||||||||||||||||||||||| || |||| || || |
|
|
| T |
22400909 |
atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgcaaattgtgtagtagctta |
22400810 |
T |
|
| Q |
800 |
acaaatttagagtggcacgaccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatc |
899 |
Q |
| |
|
|| |||| |||||| | || || || || || | || ||||||||||| ||||||| ||||| |||||||| || |||| ||| ||| |||||||| |
|
|
| T |
22400809 |
acgaattcagagtgacttgaacctaacacatctagcacactatgggtttggaggaattgtaatagatcagctagacaagtgtatgcataacacttgtatc |
22400710 |
T |
|
| Q |
900 |
tattactaagtgcagtgtcc |
919 |
Q |
| |
|
|| |||| |||| ||||||| |
|
|
| T |
22400709 |
tagtactcagtgaagtgtcc |
22400690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 600 - 781
Target Start/End: Complemental strand, 22966186 - 22966005
Alignment:
| Q |
600 |
taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc |
699 |
Q |
| |
|
||||| |||||| |||| |||||||||| |||| ||||| | ||| ||||| || || |||| || |||||||||||||| || | |||||||| || |
|
|
| T |
22966186 |
taagatcttccacatgttgacttaaaatgtctattttcaaacccaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgc |
22966087 |
T |
|
| Q |
700 |
atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc |
781 |
Q |
| |
|
|||||| || |||||||| || | ||||||||| || || ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22966086 |
atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc |
22966005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 600 - 777
Target Start/End: Complemental strand, 22792713 - 22792536
Alignment:
| Q |
600 |
taagaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttggaatctaataaattttgcaaggc |
699 |
Q |
| |
|
||||| |||||| |||| |||||||||| |||| ||||| | ||| ||||| || || |||| || ||||| |||||||| || | |||||||| || |
|
|
| T |
22792713 |
taagatcttccacatgttgacttaaaatgtctattttcaaacacaacacttcaacttctttggagacttgttgattggaatccaacagtttttgcaatgc |
22792614 |
T |
|
| Q |
700 |
atcttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagct |
777 |
Q |
| |
|
|||||| || |||||||| || | ||||||||| || || ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22792613 |
atcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagct |
22792536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22401063 - 22400997
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
22401063 |
cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac |
22400997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22792767 - 22792701
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
22792767 |
cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac |
22792701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22966240 - 22966174
Alignment:
| Q |
525 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac |
591 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
22966240 |
cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac |
22966174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 747 - 891
Target Start/End: Complemental strand, 8021543 - 8021399
Alignment:
| Q |
747 |
catccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggt |
846 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| | ||||||||| |||||| | ||||| |||| ||| || || || || ||||||| |||||| || |
|
|
| T |
8021543 |
catccaaccattccttatcaaaaggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaacacatccaacacactatgagt |
8021444 |
T |
|
| Q |
847 |
ttcaaggaatttcaatagttcagctagtaaattgtaggcacaacc |
891 |
Q |
| |
|
|| ||||||||||||||| || ||||| | ||||||||| |||| |
|
|
| T |
8021443 |
ttgaaggaatttcaatagctcggctagacagttgtaggcataacc |
8021399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 838 - 952
Target Start/End: Complemental strand, 22965948 - 22965834
Alignment:
| Q |
838 |
actatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtccttcaaatgaacagaagga |
937 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||| || |||| ||| ||| |||||||||| |||| |||| ||||||| | ||| |||| || ||| |
|
|
| T |
22965948 |
actatgggtttggaggaattgtaatagctcagctagacaagtgtatgcataacacttgtatctagtactcagtgaagtgtcccttaaaagaactgatgga |
22965849 |
T |
|
| Q |
938 |
ttcttaacaaggaaa |
952 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
22965848 |
tacttaacaaagaaa |
22965834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 5951498 - 5951596
Alignment:
| Q |
24 |
ttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaaaa |
122 |
Q |
| |
|
||||||||| ||| ||||| | |||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
5951498 |
ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgtgccgggttagtacactcactatatggatagtctgatgtcataatttccaaaa |
5951596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 720 - 952
Target Start/End: Complemental strand, 2472 - 2243
Alignment:
| Q |
720 |
caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga |
819 |
Q |
| |
|
|||||||||| ||| || | ||||||||||||||||| || ||||||||| ||| || ||| |||||||| || ||| ||||||| ||| |||| || |
|
|
| T |
2472 |
caggaaacaaggcgagcttttcaacaccatccaaccattctttatcaaaaggaaatctacgcatatcttgtaatagctcaacaaattcagaatggcttga |
2373 |
T |
|
| Q |
820 |
ccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgtatctattactaagtgcagtgtcc |
919 |
Q |
| |
|
|| || || ||||||| ||| ||| |||||||||||||| |||||||| | ||||||||| |||||||| |||| ||||| | || ||||||| |
|
|
| T |
2372 |
acctaacacatccaacaggtaatgcttttggaggaatttcaatagctcagctagacagttgtaggcataacccttgaatctgttactcaatgaagtgtcc |
2273 |
T |
|
| Q |
920 |
ttcaaatgaacagaaggattcttaacaaggaaa |
952 |
Q |
| |
|
| | |||| |||||||||||||| |||||| |
|
|
| T |
2272 |
ctta---gaactgaaggattcttaactaggaaa |
2243 |
T |
|
Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 31951657 - 31951731
Alignment:
| Q |
46 |
cgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaa |
120 |
Q |
| |
|
|||| |||||||||||||||| ||||| | | ||||||||||||||| |||| |||||||| | ||||||||| |
|
|
| T |
31951657 |
cgatgtcactttcttgtatatctgtgctggattagtacattcactatatggataatcagatgtgagcatttccaa |
31951731 |
T |
|
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