View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5666-Insertion-3 (Length: 712)

Name: NF5666-Insertion-3
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5666-Insertion-3
NF5666-Insertion-3
[»] chr4 (1 HSPs)
chr4 (8-712)||(5972428-5973121)
[»] chr1 (1 HSPs)
chr1 (95-161)||(31181557-31181623)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 712
Target Start/End: Original strand, 5972428 - 5973121
Alignment:
Q  8 ccaactgctatcatgttcttgtttcagaccaaccacaat---atccactcaccaagtccaataatgttgaaagtgagaaagtgtgttaaaagttccacat 104  Q
    |||| ||||||||||||||||||| |||||||| |||||   ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  5972428 ccaagtgctatcatgttcttgttttagaccaacaacaattatatccactcaccaagtccaataatgttgaacgtgggaaagtgtgttaaaagttccacat 5972527  T
Q  105 tcgataagaaatgacctgaacaagtgattacaagtcgaggcaatcctcatctcacaaattgttatgtgatgttgcattacatcaaaccacaaactctaag 204  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  5972528 tggataagaaatgacctgaacaagtgattaccagtcgaggcaatcctcatctcacaagttgttatgtgatgttgcgttacgtcaaaccacaaactctaag 5972627  T
Q  205 atttccttccaaataacccaaatgcaagccatctagttcaattgaatgtaaaaacgaatccttttta-ggaacactcttaagttgccaaacatattaagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||    
T  5972628 atttccttccaaataacccaaatgcaagccatctagttcaattgaatgtaaaaacgaatcccttttagggaacacttttaagttaccaaacatattaagt 5972727  T
Q  304 tgatcaaaaagattcatcgaaagctctgagtgaatgtctagccattgcataacaagagacctaatactcccnnnnnnntagacaatccnnnnnnngacgg 403  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||| |||||||||       ||||||||||       |||||    
T  5972728 tgatcaaaaagattcatcggaagttctgagtgaatgtctaaccattgcagaacaagagaccaaatactcccaaaaaaatagacaatccaaaaaaagacgg 5972827  T
Q  404 tcgaaactttcctccaagtcagaaccactcaaacaaagaatattatttgatgtaataactccacgatcaagtttgctnnnnnnnnnnnnnnnnnctccac 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                 ||||||    
T  5972828 tcgaaactttcctccaagtcagaaccactcaaacaaagaatattatttgatgtaataactccacgatcaaatttgct-----aaaaaaaaaaaactccac 5972922  T
Q  504 gatcaagtaaattgtcatttgtagggatctattacataataaacgtcaaacaaacaaagagatcttcagaggagatattatatccccaataatgtatgag 603  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||          |||||||||||| ||||||||||||||||||||    
T  5972923 gatcaagtaaattgtcatttgtagggatctattacataacaaacgttaaacaaacaa----------agaggagatattgtatccccaataatgtatgag 5973012  T
Q  604 gtatctagtagatcaacatgctctaaattagacaaaatataataaacaccactgactctgtagctttcaccaagatcaaacttctaataccatttatctt 703  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  5973013 gtatctagtagatcaacatgctctaaattagacaaaatatagtaaacaccactaagtgtgtagctttcaccaagatcaaacttctaataccatttatctt 5973112  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 31181623 - 31181557
Alignment:
Q  95 agttccacattcgataagaaatgacctgaacaagtgattacaagtcgaggcaatcctcatctcacaa 161  Q
    ||||||||||| ||||||| ||| |||||||| ||| ||| |||| | ||||||||||| |||||||    
T  31181623 agttccacattggataagagatggcctgaacatgtgtttataagtgggggcaatcctcacctcacaa 31181557  T

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