View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666-Insertion-4 (Length: 616)
Name: NF5666-Insertion-4
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 190 - 616
Target Start/End: Complemental strand, 16129033 - 16128611
Alignment:
| Q |
190 |
gacaaattaaacagttgattttagtctctaacgtcagcttattgaacaaggtggaatggttagtaaaatcaaaaaatcacaccaccttactcaataagtt |
289 |
Q |
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| T |
16129033 |
gacaaattaaacagttgattttagtctctaacatcagcttattgaacaaggtggaatggttagtaaaatcaaaaaatcacaccacctgagt----aagtt |
16128938 |
T |
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| Q |
290 |
gacatgagagactaaaataacaactttcgaatttgtaagaaccaaatccaaacaaaatttaccgggactaaaaccgaaaacactataattgcagtggcta |
389 |
Q |
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| T |
16128937 |
gacatgagagactaaaataacaactttcgaatttgtaagaaccaaatccaaacaaaatttaccgggactaaaaccgaaaacaatataattgcagtggcta |
16128838 |
T |
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| Q |
390 |
aaatcatatttaaataagaaataataacaacaaattacctaacatagactaaaatcaaatttaagaaaaagtagtaataacaaattaccttatcaaacct |
489 |
Q |
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| T |
16128837 |
aaatcatatttaaacaagaaataataacaacaaattacctaacatagactaaaatcatatttaagaaaaagtagtaataacaaattaccttatcaaacct |
16128738 |
T |
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| Q |
490 |
tcgattttgcaacgactccaaacacagaaccttatgctgcgtcgcaaaatctctctctaccgacgctaccttccccaacgcctccgccgaggctttcctc |
589 |
Q |
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| T |
16128737 |
tcgattttgcaacgactccaaacacagaaccttatgctgcgtcgcaaaatctctctctaccgacgctaccttccccaacgcctccgccgaggctttcctc |
16128638 |
T |
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| Q |
590 |
acagtccaatcctcacttccaagcaac |
616 |
Q |
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| T |
16128637 |
acagtccaatcctcacttccaagcaac |
16128611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 16129219 - 16129106
Alignment:
| Q |
4 |
aacaactttcacctgcaataatcacatcaacattcaacgactctattaattttcatttcctttttctccttttcattatcaccattttcaaaaaggtata |
103 |
Q |
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| T |
16129219 |
aacaactttcacctgcaataatcacatcaacattcaacaactctattaattttcatttcctttttctccttttcattatcaccattttcaaaaaggtata |
16129120 |
T |
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| Q |
104 |
ttcttcaaacaaag |
117 |
Q |
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| T |
16129119 |
ttcttcaaacaaag |
16129106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 22159567 - 22159617
Alignment:
| Q |
353 |
gggactaaaaccgaaaacactataattgcagtggctaaaatcatatttaaa |
403 |
Q |
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| T |
22159567 |
gggactaaaaccaaaaacactataattgtagggactaaagtcatatttaaa |
22159617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 22218275 - 22218325
Alignment:
| Q |
353 |
gggactaaaaccgaaaacactataattgcagtggctaaaatcatatttaaa |
403 |
Q |
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| T |
22218275 |
gggactaaaaccaaaaacactataattgtagggactaaagtcatatttaaa |
22218325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 32847649 - 32847695
Alignment:
| Q |
353 |
gggactaaaaccgaaaacactataattgcagtggctaaaatcatatt |
399 |
Q |
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| T |
32847649 |
gggactaaaaccaaacacactataattgcagtaactaaaatcatatt |
32847695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 32850112 - 32850157
Alignment:
| Q |
353 |
gggactaaaaccgaaaacactataattgcagtggctaaaatcatat |
398 |
Q |
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| T |
32850112 |
gggactaaaaccaaaaacactataattgcaggaactaaaatcatat |
32850157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 32850205 - 32850250
Alignment:
| Q |
353 |
gggactaaaaccgaaaacactataattgcagtggctaaaatcatat |
398 |
Q |
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| T |
32850205 |
gggactaaaaccaaaaacactataattgcaggaactaaaatcatat |
32850250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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