View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5666-Insertion-5 (Length: 606)

Name: NF5666-Insertion-5
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5666-Insertion-5
NF5666-Insertion-5
[»] chr8 (34 HSPs)
chr8 (8-386)||(8697574-8697951)
chr8 (8-386)||(10646592-10646969)
chr8 (8-387)||(45278377-45278755)
chr8 (8-387)||(40486134-40486507)
chr8 (103-386)||(41307731-41308014)
chr8 (478-604)||(15917672-15917797)
chr8 (333-387)||(27034996-27035050)
chr8 (333-387)||(43275621-43275675)
chr8 (333-386)||(3585451-3585504)
chr8 (333-386)||(40918953-40919006)
chr8 (8-54)||(41307675-41307721)
chr8 (333-386)||(2540155-2540208)
chr8 (333-386)||(7146913-7146966)
chr8 (333-386)||(11174447-11174500)
chr8 (333-386)||(11646549-11646602)
chr8 (333-386)||(40058527-40058580)
chr8 (333-389)||(37345568-37345624)
chr8 (334-387)||(36068079-36068132)
chr8 (333-379)||(30999745-30999791)
chr8 (342-387)||(20546520-20546565)
chr8 (345-386)||(41305762-41305803)
chr8 (358-387)||(132016-132045)
chr8 (345-386)||(28562421-28562462)
chr8 (345-386)||(28567919-28567960)
chr8 (345-386)||(28575512-28575553)
chr8 (345-386)||(45278013-45278053)
chr8 (358-386)||(616783-616811)
chr8 (358-386)||(617017-617045)
chr8 (358-386)||(623176-623204)
chr8 (358-386)||(623410-623438)
chr8 (354-386)||(5878317-5878349)
chr8 (358-386)||(14237514-14237542)
chr8 (358-386)||(40494618-40494646)
chr8 (358-386)||(42587482-42587510)
[»] chr1 (31 HSPs)
chr1 (8-386)||(3943060-3943437)
chr1 (8-386)||(9588670-9589047)
chr1 (65-386)||(13984724-13985044)
chr1 (188-387)||(41959077-41959276)
chr1 (172-386)||(44228068-44228281)
chr1 (246-378)||(1168369-1168499)
chr1 (333-387)||(284332-284386)
chr1 (333-387)||(23045503-23045557)
chr1 (333-385)||(27211188-27211240)
chr1 (333-387)||(321625-321679)
chr1 (333-387)||(24772129-24772183)
chr1 (333-379)||(46771644-46771690)
chr1 (333-386)||(40783881-40783934)
chr1 (345-386)||(44227848-44227889)
chr1 (344-386)||(47038085-47038127)
chr1 (345-386)||(3943763-3943804)
chr1 (333-386)||(23526240-23526293)
chr1 (146-183)||(41959262-41959299)
chr1 (345-386)||(41959809-41959850)
chr1 (345-386)||(9589631-9589672)
chr1 (358-387)||(16120674-16120703)
chr1 (358-386)||(6402644-6402672)
chr1 (354-386)||(10845481-10845513)
chr1 (358-386)||(11641067-11641095)
chr1 (355-387)||(13984436-13984468)
chr1 (358-386)||(30701718-30701746)
chr1 (358-386)||(36399332-36399360)
chr1 (358-386)||(36757486-36757514)
chr1 (358-386)||(40771772-40771800)
chr1 (358-386)||(40772006-40772034)
chr1 (358-386)||(52024260-52024288)
[»] chr7 (26 HSPs)
chr7 (8-386)||(2911224-2911601)
chr7 (65-386)||(25059865-25060186)
chr7 (333-386)||(10981508-10981561)
chr7 (333-386)||(27813811-27813864)
chr7 (333-384)||(36453348-36453399)
chr7 (333-387)||(47110450-47110504)
chr7 (334-387)||(25614576-25614629)
chr7 (333-386)||(40348960-40349013)
chr7 (559-604)||(37810241-37810286)
chr7 (345-380)||(25059456-25059491)
chr7 (358-388)||(36623306-36623336)
chr7 (345-386)||(2910859-2910900)
chr7 (358-387)||(47156026-47156055)
chr7 (358-386)||(16778505-16778533)
chr7 (358-386)||(20885103-20885131)
chr7 (358-386)||(25566548-25566576)
chr7 (358-386)||(28061515-28061543)
chr7 (358-386)||(28061749-28061777)
chr7 (358-386)||(36623542-36623570)
chr7 (358-386)||(38852081-38852109)
chr7 (358-386)||(41897988-41898016)
chr7 (358-386)||(41898222-41898250)
chr7 (358-386)||(42877386-42877414)
chr7 (358-386)||(46103370-46103398)
chr7 (358-386)||(46103597-46103625)
chr7 (358-386)||(47156261-47156289)
[»] chr3 (38 HSPs)
chr3 (8-386)||(12094582-12094959)
chr3 (65-386)||(44277187-44277508)
chr3 (65-386)||(40931622-40931941)
chr3 (191-387)||(19911508-19911704)
chr3 (193-386)||(38805245-38805444)
chr3 (78-241)||(19911693-19911856)
chr3 (233-377)||(4226716-4226856)
chr3 (233-386)||(4235751-4235900)
chr3 (468-596)||(54874890-54875016)
chr3 (333-386)||(29375138-29375191)
chr3 (333-387)||(36881281-36881335)
chr3 (333-386)||(27707388-27707441)
chr3 (333-387)||(198854-198908)
chr3 (333-386)||(3383076-3383129)
chr3 (333-386)||(13364843-13364896)
chr3 (333-386)||(19241892-19241945)
chr3 (333-386)||(43750137-43750190)
chr3 (333-379)||(32835180-32835226)
chr3 (12-54)||(38805519-38805561)
chr3 (333-387)||(46694334-46694388)
chr3 (345-386)||(19912174-19912215)
chr3 (345-386)||(38806341-38806382)
chr3 (343-386)||(48963156-48963199)
chr3 (333-387)||(23088155-23088209)
chr3 (345-387)||(44276774-44276816)
chr3 (345-386)||(12095423-12095464)
chr3 (333-386)||(13702769-13702822)
chr3 (23-54)||(38805598-38805629)
chr3 (358-387)||(13499569-13499598)
chr3 (358-387)||(19823899-19823928)
chr3 (345-386)||(37293437-37293478)
chr3 (358-387)||(42761717-42761746)
chr3 (358-386)||(6910568-6910596)
chr3 (358-386)||(20765430-20765458)
chr3 (358-386)||(27010474-27010502)
chr3 (358-386)||(27010708-27010736)
chr3 (358-386)||(42490430-42490458)
chr3 (358-386)||(42761483-42761511)
[»] chr2 (20 HSPs)
chr2 (209-386)||(34224254-34224431)
chr2 (483-597)||(37784855-37784968)
chr2 (333-386)||(1102503-1102556)
chr2 (333-386)||(3518908-3518961)
chr2 (333-386)||(12969963-12970016)
chr2 (333-385)||(23366790-23366842)
chr2 (333-386)||(37673961-37674014)
chr2 (333-386)||(39938170-39938223)
chr2 (478-604)||(29762735-29762860)
chr2 (348-387)||(12969739-12969778)
chr2 (358-389)||(44365391-44365422)
chr2 (348-386)||(40756911-40756949)
chr2 (358-387)||(11841592-11841621)
chr2 (358-386)||(2183191-2183219)
chr2 (358-386)||(5405230-5405258)
chr2 (358-386)||(7608283-7608311)
chr2 (358-386)||(8042256-8042284)
chr2 (358-386)||(19141066-19141094)
chr2 (358-386)||(19141300-19141328)
chr2 (358-386)||(39358146-39358174)
[»] scaffold0257 (2 HSPs)
scaffold0257 (212-386)||(23467-23641)
scaffold0257 (345-387)||(23872-23914)
[»] chr6 (31 HSPs)
chr6 (212-386)||(19996594-19996768)
chr6 (385-604)||(10570078-10570295)
chr6 (468-604)||(7022331-7022466)
chr6 (333-386)||(1605579-1605632)
chr6 (333-386)||(7761301-7761354)
chr6 (468-604)||(26292705-26292831)
chr6 (333-386)||(29260192-29260245)
chr6 (333-387)||(8626481-8626535)
chr6 (334-387)||(4129434-4129487)
chr6 (333-386)||(15064918-15064971)
chr6 (333-386)||(17942443-17942496)
chr6 (333-379)||(30734707-30734753)
chr6 (333-386)||(13757208-13757261)
chr6 (337-380)||(30734836-30734879)
chr6 (345-386)||(19996322-19996363)
chr6 (333-386)||(8235624-8235677)
chr6 (334-371)||(31559961-31559998)
chr6 (358-389)||(22055006-22055037)
chr6 (348-386)||(15064695-15064733)
chr6 (348-386)||(17942682-17942720)
chr6 (358-387)||(25476042-25476071)
chr6 (358-386)||(4147931-4147959)
chr6 (358-386)||(18668688-18668716)
chr6 (358-386)||(18668922-18668950)
chr6 (358-386)||(19087958-19087986)
chr6 (358-386)||(19088192-19088220)
chr6 (358-386)||(20437017-20437045)
chr6 (358-386)||(24623941-24623969)
chr6 (358-386)||(32414913-32414941)
chr6 (358-386)||(32420754-32420782)
chr6 (358-386)||(32671816-32671844)
[»] chr5 (19 HSPs)
chr5 (212-386)||(15305094-15305265)
chr5 (333-387)||(30720716-30720770)
chr5 (333-386)||(12807077-12807130)
chr5 (333-386)||(16983258-16983311)
chr5 (333-386)||(25773649-25773702)
chr5 (333-386)||(37900848-37900901)
chr5 (172-254)||(31485620-31485702)
chr5 (333-386)||(10285281-10285334)
chr5 (333-386)||(40886834-40886887)
chr5 (333-387)||(36561323-36561377)
chr5 (334-375)||(7277647-7277688)
chr5 (345-386)||(15304822-15304863)
chr5 (348-386)||(25683229-25683267)
chr5 (358-387)||(978311-978340)
chr5 (358-387)||(33387453-33387482)
chr5 (358-386)||(978077-978105)
chr5 (358-386)||(8086264-8086292)
chr5 (358-386)||(9502627-9502655)
chr5 (358-386)||(14634157-14634185)
[»] chr4 (33 HSPs)
chr4 (216-371)||(19361662-19361817)
chr4 (208-355)||(20541492-20541643)
chr4 (468-604)||(21374635-21374770)
chr4 (468-604)||(19816761-19816896)
chr4 (334-386)||(40122710-40122762)
chr4 (333-386)||(14261044-14261097)
chr4 (333-386)||(21310425-21310478)
chr4 (333-386)||(21661759-21661812)
chr4 (333-386)||(21670523-21670576)
chr4 (333-386)||(25704651-25704704)
chr4 (333-386)||(34324807-34324860)
chr4 (334-386)||(12071561-12071613)
chr4 (333-386)||(22321491-22321544)
chr4 (333-386)||(24706471-24706524)
chr4 (334-386)||(44568837-44568889)
chr4 (333-387)||(20249236-20249290)
chr4 (333-384)||(31892240-31892291)
chr4 (345-379)||(19362189-19362223)
chr4 (358-387)||(2760729-2760758)
chr4 (358-387)||(2760961-2760990)
chr4 (358-387)||(19433357-19433386)
chr4 (358-387)||(55209573-55209602)
chr4 (358-387)||(55209808-55209837)
chr4 (358-386)||(4467520-4467548)
chr4 (358-386)||(26169986-26170014)
chr4 (358-386)||(26170221-26170249)
chr4 (358-386)||(29830343-29830371)
chr4 (358-386)||(35381128-35381156)
chr4 (358-386)||(38416650-38416678)
chr4 (358-386)||(38416884-38416912)
chr4 (358-386)||(44232077-44232105)
chr4 (358-386)||(45292066-45292094)
chr4 (358-386)||(47386520-47386548)
[»] scaffold1770 (1 HSPs)
scaffold1770 (334-387)||(169-222)
[»] scaffold1431 (1 HSPs)
scaffold1431 (333-386)||(123-176)
[»] scaffold0054 (1 HSPs)
scaffold0054 (333-386)||(45454-45507)
[»] scaffold0022 (1 HSPs)
scaffold0022 (358-387)||(100646-100675)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 8697574 - 8697951
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  8697574 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 8697672  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8697673 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatatattggtattgaagga 8697772  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697773 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 8697872  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697873 aacttttgtgtcaaactagtttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 8697951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 10646969 - 10646592
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  10646969 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 10646871  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646870 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 10646771  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646770 tgattcaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 10646671  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10646670 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagta 10646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 45278377 - 45278755
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        || ||    
T  45278377 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattata 45278475  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45278476 ttggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccaatatgtattggtattgaagga 45278575  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278576 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 45278675  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278676 aacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 45278755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 40486134 - 40486507
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  40486134 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 40486232  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486233 ttggcatgctattttcaatacataa-----gcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 40486327  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486328 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 40486427  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40486428 aacttttgtgtcaaattagcttgtccttggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagtaa 40486507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 103 - 386
Target Start/End: Original strand, 41307731 - 41308014
Alignment:
Q  103 ttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41307731 ttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattggtattg 41307830  T
Q  203 aaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtata 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41307831 aaggatgattgaatttaattaattttgatattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtata 41307930  T
Q  303 ataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41307931 ataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 41308014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 478 - 604
Target Start/End: Complemental strand, 15917797 - 15917672
Alignment:
Q  478 cttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggtaaattgggtt 577  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||| |||| |||||||| ||||| |||||||||||||    
T  15917797 cttgatcctaatggtaatatcttcattattacatgttgggtcttatggaaggcacaaaatcataaggttttcaatggaaa-tgattaggtaaattgggtt 15917699  T
Q  578 tgtcttagccatatttattcccttcat 604  Q
    || ||||||||||||||||| ||||||    
T  15917698 tgacttagccatatttattctcttcat 15917672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 27035050 - 27034996
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27035050 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 27034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 43275621 - 43275675
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43275621 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 43275675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 3585504 - 3585451
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3585504 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 40918953 - 40919006
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40918953 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 40919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 41307675 - 41307721
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagttt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41307675 ttaagattagagtataaattttggagggaagtttttcaattgagttt 41307721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 2540155 - 2540208
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2540155 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaggaagta 2540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 7146966 - 7146913
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  7146966 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 11174447 - 11174500
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  11174447 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 11646549 - 11646602
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  11646549 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgaagggagta 11646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 40058527 - 40058580
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  40058527 cttggttagtgcaatttctccgaaatggacatgtattttgaaacggagggagta 40058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 37345624 - 37345568
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaagt 389  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  37345624 cttggttggtgcaatttcttcaaaatggacatgtattttgaaacggagggagtaagt 37345568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 36068132 - 36068079
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  36068132 ttggttagtacaattcctccaaaatggacatgtattttgaaacggagggagtaa 36068079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 30999745 - 30999791
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 379  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30999745 cttggttagtgcaatttctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 20546520 - 20546565
Alignment:
Q  342 tgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||    
T  20546520 tgcaatttcttcaaaatggacatatattttgaaatggagggagtaa 20546565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 41305803 - 41305762
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 132045 - 132016
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  132045 tggacatgtattttgaaacggagggagtaa 132016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 28562462 - 28562421
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28562462 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28562421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 28567960 - 28567919
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28567960 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28567919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 28575553 - 28575512
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28575553 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28575512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 45278053 - 45278013
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  45278053 aatttctctaaaatggacatgtattttgaaac-gagggagta 45278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 616811 - 616783
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  616811 tggacatgtattttgaaacggagggagta 616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 617017 - 617045
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  617017 tggacatgtattttgaaacggagggagta 617045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 623204 - 623176
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  623204 tggacatgtattttgaaacggagggagta 623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 623410 - 623438
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  623410 tggacatgtattttgaaacggagggagta 623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 5878349 - 5878317
Alignment:
Q  354 aaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||| |||||||||||||||    
T  5878349 aaaatggacatgtatttggaaacggagggagta 5878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 14237514 - 14237542
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  14237514 tggacatgtattttgaaacggagggagta 14237542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 40494618 - 40494646
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  40494618 tggacatgtattttgaaacggagggagta 40494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 42587482 - 42587510
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  42587482 tggacatgtattttgaaacggagggagta 42587510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 3943437 - 3943060
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        || ||    
T  3943437 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattata 3943339  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943338 ttggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 3943239  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943238 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 3943139  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943138 aacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 3943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 9589047 - 9588670
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  9589047 ttaagattaaagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 9588949  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9588948 ttggcatgctattttcaatatataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 9588849  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9588848 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataatagg 9588749  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9588748 aacttttgtgtcaaaatagattgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 9588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 65 - 386
Target Start/End: Original strand, 13984724 - 13985044
Alignment:
Q  65 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 164  Q
    |||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  13984724 ttgataaccgaagcatgataagagaagttgaaaaaaa-ttgtattggcatgctattttcaatacataaccacaacaaaaacaatgtgatttactagatga 13984822  T
Q  165 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984823 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 13984922  T
Q  265 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984923 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 13985022  T
Q  365 gtattttgaaacggagggagta 386  Q
    ||||||||||||||| ||||||    
T  13985023 gtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 41959276 - 41959077
Alignment:
Q  188 tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959276 tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc 41959177  T
Q  288 aaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41959176 aaagacaagggtataatatgaacttttgtgtcaaactagcttgtccttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 41959077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 172 - 386
Target Start/End: Original strand, 44228068 - 44228281
Alignment:
Q  172 gtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatg 271  Q
    |||| ||||||||| ||||||||||||||||     ||||||| ||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  44228068 gtatcggtattgccggtatgtattggtattgccatttgattgactttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatg 44228167  T
Q  272 taaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 371  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44228168 taaaatgaaggaaataaaaaacaagggtataataggaacttttatgtc-agctagcttgtccttggttacagcaatttctccaaaatggacatgtatttt 44228266  T
Q  372 gaaacggagggagta 386  Q
    |||| ||||| ||||    
T  44228267 gaaatggaggtagta 44228281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 1168499 - 1168369
Alignment:
Q  246 taattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgca 345  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||    
T  1168499 taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtccttggttactgca 1168402  T
Q  346 atttctccaaaatggacatgtattttgaaacgg 378  Q
    |||||| |||||  |||||||||||||||||||    
T  1168401 atttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 284386 - 284332
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  284386 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 284332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 23045503 - 23045557
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23045503 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 23045557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 27211188 - 27211240
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagt 385  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27211188 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 321679 - 321625
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  321679 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagtaa 321625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 24772129 - 24772183
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  24772129 cttggttagtgcaatttcttcaaaatggacatgtattttgaaacggagggagtaa 24772183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 46771690 - 46771644
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46771690 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 40783881 - 40783934
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  40783881 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 40783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 44227889 - 44227848
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagta 44227848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 47038085 - 47038127
Alignment:
Q  344 caatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  47038085 caatttctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 23526293 - 23526240
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  23526293 cttgattactgcaatttctccaaaatgaacatgtattttgaaatggaaggagta 23526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 41959299 - 41959262
Alignment:
Q  146 aatgtgatttactagatgaaccatatgtattggtattg 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41959299 aatgtgatttactagatgaaccatatgtattggtattg 41959262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 41959809 - 41959850
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 9589631 - 9589672
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 16120674 - 16120703
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  16120674 tggacatgtattttgaaacggagggagtaa 16120703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 6402644 - 6402672
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  6402644 tggacatgtattttgaaacggagggagta 6402672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 10845513 - 10845481
Alignment:
Q  354 aaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||| |||||    
T  10845513 aaaatggacatgtattttgaaacggagtgagta 10845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 11641095 - 11641067
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  11641095 tggacatgtattttgaaacggagggagta 11641067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 13984468 - 13984436
Alignment:
Q  355 aaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||| |||||||||||||||||||||||||    
T  13984468 aaatggatatgtattttgaaacggagggagtaa 13984436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 30701746 - 30701718
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  30701746 tggacatgtattttgaaacggagggagta 30701718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 36399332 - 36399360
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  36399332 tggacatgtattttgaaacggagggagta 36399360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 36757514 - 36757486
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  36757514 tggacatgtattttgaaacggagggagta 36757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 40771800 - 40771772
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  40771800 tggacatgtattttgaaacggagggagta 40771772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 40772006 - 40772034
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  40772006 tggacatgtattttgaaacggagggagta 40772034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 52024260 - 52024288
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  52024260 tggacatgtattttgaaacggagggagta 52024288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 2911224 - 2911601
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||          |||||||||||| |||||||||||||||||        || ||    
T  2911224 ttaagattagagtataaattttggaggaaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattata 2911322  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911323 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 2911422  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911423 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 2911522  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2911523 aacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaatggagggagta 2911601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 65 - 386
Target Start/End: Original strand, 25059865 - 25060186
Alignment:
Q  65 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 164  Q
    |||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25059865 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 25059964  T
Q  165 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 264  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25059965 accatatgtattggtattgtcagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgagagtaattatgagatggggtaa 25060064  T
Q  265 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25060065 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 25060164  T
Q  365 gtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||    
T  25060165 gtattttgaaacggagggagta 25060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 10981561 - 10981508
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10981561 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 10981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 27813864 - 27813811
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27813864 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 27813811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 36453348 - 36453399
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggag 384  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36453348 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 47110504 - 47110450
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  47110504 cttggttagtgcaatttctccaaaatggacatgtattttgaaatggagggagtaa 47110450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 25614576 - 25614629
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  25614576 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagtaa 25614629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 40349013 - 40348960
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40349013 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 37810241 - 37810286
Alignment:
Q  559 tgattgggtaaattgggtttgtcttagccatatttattcccttcat 604  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  37810241 tgattgggtaaattggatttgtcttagccatatttattctcttcat 37810286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 25059491 - 25059456
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggag 380  Q
    |||||||| |||||||||||||||||||||||||||    
T  25059491 aatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 388
Target Start/End: Complemental strand, 36623336 - 36623306
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaag 388  Q
    |||||||||||||||||||||||||||||||    
T  36623336 tggacatgtattttgaaacggagggagtaag 36623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 2910900 - 2910859
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagta 2910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 47156055 - 47156026
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  47156055 tggacatgtattttgaaacggagggagtaa 47156026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 16778533 - 16778505
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  16778533 tggacatgtattttgaaacggagggagta 16778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 20885131 - 20885103
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  20885131 tggacatgtattttgaaacggagggagta 20885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 25566576 - 25566548
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  25566576 tggacatgtattttgaaacggagggagta 25566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 28061543 - 28061515
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  28061543 tggacatgtattttgaaacggagggagta 28061515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 28061749 - 28061777
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  28061749 tggacatgtattttgaaacggagggagta 28061777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 36623542 - 36623570
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  36623542 tggacatgtattttgaaacggagggagta 36623570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 38852081 - 38852109
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  38852081 tggacatgtattttgaaacggagggagta 38852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 41898016 - 41897988
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  41898016 tggacatgtattttgaaacggagggagta 41897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 41898222 - 41898250
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  41898222 tggacatgtattttgaaacggagggagta 41898250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 42877414 - 42877386
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  42877414 tggacatgtattttgaaacggagggagta 42877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 46103398 - 46103370
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  46103398 tggacatgtattttgaaacggagggagta 46103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 46103597 - 46103625
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  46103597 tggacatgtattttgaaacggagggagta 46103625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 47156261 - 47156289
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  47156261 tggacatgtattttgaaacggagggagta 47156289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 12094959 - 12094582
Alignment:
Q  8 ttaagattagagtataaattttggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||          |||||||||||| ||||| |||||||||||        |||||    
T  12094959 ttaagattagagtataaattttggagggaagtttttcaattgaatttaaaaaaaaa-ttgataaccgaagcatgacaagagaagttgaaaaaaaattgta 12094861  T
Q  108 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 207  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  12094860 ttggcatgctattttcaatacataaccgcaataaaaacaatgtgatttactagatgaaccatatgtattggtattgtcggtatgtattggtattgaagga 12094761  T
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12094760 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataatagg 12094661  T
Q  308 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094660 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 12094582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 65 - 386
Target Start/End: Original strand, 44277187 - 44277508
Alignment:
Q  65 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 164  Q
    |||||||||||| |||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44277187 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacataaccgcagcaaaaaccatgtgatttactagatga 44277286  T
Q  165 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44277287 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 44277386  T
Q  265 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 364  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44277387 ataaatgtaaaatggagaaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacat 44277486  T
Q  365 gtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||    
T  44277487 gtattttgaaacggagggagta 44277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 65 - 386
Target Start/End: Complemental strand, 40931941 - 40931622
Alignment:
Q  65 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 164  Q
    |||||||||||| |||||||||||||||||        ||||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  40931941 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtgatggcatgctatttttaatacataaccgcagcaaaaacaat-tgatttactagatga 40931843  T
Q  165 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 264  Q
    ||| ||||||||||||||| || ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40931842 accgtatgtattggtattgtcactatgtatcggtattgaaggat-attgactttaattaattttggtattggtattgggagtaactatgagatggggtaa 40931744  T
Q  265 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 364  Q
    |||||  ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||| || ||||| |  ||||| |||||    
T  40931743 ataaacataaaatggaggaaatcaaagacaagagtataataggaacttttgtgttaatctagcttgtgcttggttaatgtaatttttttaaaatagacat 40931644  T
Q  365 gtattttgaaacggagggagta 386  Q
    ||||||| ||||||| ||||||    
T  40931643 gtattttaaaacggatggagta 40931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 191 - 387
Target Start/End: Complemental strand, 19911704 - 19911508
Alignment:
Q  191 gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19911704 gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaa 19911605  T
Q  291 gacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19911604 gacaagggtataataggaacttttgtgtcaaactaacttgtccttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagtaa 19911508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 193 - 386
Target Start/End: Complemental strand, 38805444 - 38805245
Alignment:
Q  193 attggtattgaaggatgattgaatttaattaattttggtattggtattgg------gagtaattatgagatggggtaaataaatgtaaaatggaggaaat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  38805444 attggtattgaaggatgattgaatttaattaattttggtattggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaat 38805345  T
Q  287 caaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38805344 caaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 19911856 - 19911693
Alignment:
Q  78 catgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattg 177  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19911856 catgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacataaccgaagcaaaaacaatgtgatttaatagatgaaccatatgtattg 19911757  T
Q  178 gtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19911756 gtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattg 19911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 4226856 - 4226716
Alignment:
Q  233 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 332  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  4226856 ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtgtcaaactagtttgtc 4226760  T
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacg 377  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaacg 4226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 233 - 386
Target Start/End: Complemental strand, 4235900 - 4235751
Alignment:
Q  233 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 332  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  4235900 ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtatcaaactagcttgtc 4235804  T
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||  |||||||||||||||||| || |||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaacgaagtgagta 4235751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 596
Target Start/End: Original strand, 54874890 - 54875016
Alignment:
Q  468 acattatgatcttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggt 567  Q
    ||||||||  |||| |||||||||||||||||| |||| | |||||||||||||||||||| || ||||||| |||  ||||||| |||| ||||||| |    
T  54874890 acattatgtccttgctcctaatggtaatatcttcattactgcatgttgggtcttatggaaggcacgaaatcagaag-gttttaat-gaaaatgattggat 54874987  T
Q  568 aaattgggtttgtcttagccatatttatt 596  Q
    |||||||||||||||||||||||||||||    
T  54874988 aaattgggtttgtcttagccatatttatt 54875016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 29375191 - 29375138
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29375191 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 29375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 36881335 - 36881281
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36881335 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 36881281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 27707388 - 27707441
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27707388 cttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 198908 - 198854
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  198908 cttggtcagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 198854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 3383129 - 3383076
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  3383129 cttggttactgcaatttctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 13364896 - 13364843
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  13364896 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 13364843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 19241892 - 19241945
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19241892 cttggttagtgcaatttcaccaaaatggacatgtattttgaaacggagggagta 19241945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 43750190 - 43750137
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  43750190 cttggttactccaatttctccaaaatggacatgtattttgaaacgaagggagta 43750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 32835180 - 32835226
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 379  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32835180 cttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 38805561 - 38805519
Alignment:
Q  12 gattagagtataaattttggagggaagtttttcaattgagttt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38805561 gattagagtataaattttggagggaagtttttcaattgagttt 38805519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 46694334 - 46694388
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  46694334 cttgattagtgcaatttctccaaaaaggacatgtattttgaaacggagggagtaa 46694388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 19912174 - 19912215
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 38806341 - 38806382
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 48963199 - 48963156
Alignment:
Q  343 gcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  48963199 gcaatttctccaaaatagatatgtattttgaaacggagggagta 48963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 23088155 - 23088209
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||| ||||||||||    
T  23088155 cttggttagtgcaatttcttcaaaatagacatatattttgaaacagagggagtaa 23088209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 44276816 - 44276774
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagtaa 44276774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 13702822 - 13702769
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||| | |||||||||| ||| ||| ||||||    
T  13702822 cttggttactgcaatttctccaaaataggcatgtattttaaaatggatggagta 13702769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 38805629 - 38805598
Alignment:
Q  23 aaattttggagggaagtttttcaattgagttt 54  Q
    ||||||||||||||||||||||||||||||||    
T  38805629 aaattttggagggaagtttttcaattgagttt 38805598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 13499569 - 13499598
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  13499569 tggacatgtattttgaaacggagggagtaa 13499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 19823928 - 19823899
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  19823928 tggacatgtattttgaaacggagggagtaa 19823899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 37293478 - 37293437
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  37293478 aatttcttcaaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 42761717 - 42761746
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  42761717 tggacatgtattttgaaacggagggagtaa 42761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 6910568 - 6910596
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  6910568 tggacatgtattttgaaacggagggagta 6910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 20765430 - 20765458
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  20765430 tggacatgtattttgaaacggagggagta 20765458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 27010502 - 27010474
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  27010502 tggacatgtattttgaaacggagggagta 27010474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 27010708 - 27010736
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  27010708 tggacatgtattttgaaacggagggagta 27010736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 42490430 - 42490458
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  42490430 tggacatgtattttgaaacggagggagta 42490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 42761511 - 42761483
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  42761511 tggacatgtattttgaaacggagggagta 42761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 209 - 386
Target Start/End: Original strand, 34224254 - 34224431
Alignment:
Q  209 gattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224254 gattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagga 34224353  T
Q  309 acttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224354 acttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 483 - 597
Target Start/End: Complemental strand, 37784968 - 37784855
Alignment:
Q  483 tcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggtaaattgggtttgtct 582  Q
    ||||||| |||||||||| ||||| |||  ||| |||||||||||||||||||||| |||| |||||||| |||| | ||||||||||||| ||||||||    
T  37784968 tcctaatagtaatatcttcattataacacattgagtcttatggaagacatgaaatcgtaaggtttttaat-gaaaataattgggtaaattgagtttgtct 37784870  T
Q  583 tagccatatttattc 597  Q
    |||||||||| ||||    
T  37784869 tagccatattaattc 37784855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 1102556 - 1102503
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102556 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 3518961 - 3518908
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3518961 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 12969963 - 12970016
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12969963 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 23366842 - 23366790
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagt 385  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23366842 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 37673961 - 37674014
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  37673961 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 39938223 - 39938170
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  39938223 cttggttagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 604
Target Start/End: Original strand, 29762735 - 29762860
Alignment:
Q  478 cttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggtaaattgggtt 577  Q
    |||| |||||||||| ||||||| ||| | |  || ||||||||||||||| |   |||| |||||||||| |||| |||  ||||||||||||||  ||    
T  29762735 cttgctcctaatggttatatcttcattgtaatgtggtgggtcttatggaaggctcaaaatgataagattttcaatgaaaac-gattgggtaaattgaatt 29762833  T
Q  578 tgtcttagccatatttattcccttcat 604  Q
    || |||| |||||||||||| ||||||    
T  29762834 tggcttaaccatatttattctcttcat 29762860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 12969778 - 12969739
Alignment:
Q  348 ttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  12969778 ttctccaaaatggacaagtattatgaaacggagggagtaa 12969739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 44365391 - 44365422
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaagt 389  Q
    ||||||||||||||||||||||||||||||||    
T  44365391 tggacatgtattttgaaacggagggagtaagt 44365422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 40756949 - 40756911
Alignment:
Q  348 ttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40756949 ttctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 11841621 - 11841592
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  11841621 tggacatgtattttgaaacggagggagtaa 11841592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 2183191 - 2183219
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  2183191 tggacatgtattttgaaacggagggagta 2183219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 5405230 - 5405258
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  5405230 tggacatgtattttgaaacggagggagta 5405258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 7608283 - 7608311
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  7608283 tggacatgtattttgaaacggagggagta 7608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 8042256 - 8042284
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  8042256 tggacatgtattttgaaacggagggagta 8042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 19141094 - 19141066
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  19141094 tggacatgtattttgaaacggagggagta 19141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 19141300 - 19141328
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  19141300 tggacatgtattttgaaacggagggagta 19141328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 39358174 - 39358146
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  39358174 tggacatgtattttgaaacggagggagta 39358146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 23641 - 23467
Alignment:
Q  212 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23641 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 23542  T
Q  312 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23541 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 23872 - 23914
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagtaa 23914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 4e-89; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 19996594 - 19996768
Alignment:
Q  212 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19996594 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaaggtataataggaact 19996693  T
Q  312 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19996694 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 19996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 385 - 604
Target Start/End: Original strand, 10570078 - 10570295
Alignment:
Q  385 taagtgcagaaaataaagtgtgtgaatgttctccttaaaataaaaaagtgtgtatattcatcattggaaaatgattgggtcttacattatgatcttggtc 484  Q
    ||||||||||||||||  |||||||||||||||| |||||||||| |||||||| ||||||||| || |||||||| |||||||||||||||||||||||    
T  10570078 taagtgcagaaaataagttgtgtgaatgttctccataaaataaaa-agtgtgtacattcatcatcgggaaatgattaggtcttacattatgatcttggtc 10570176  T
Q  485 ctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggtaaattgggtttgtctta 584  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  10570177 ctaatggtaatatcttcattattacatgttgggtcatatggaagacacgaaatcataaggtttttaatggaaa-tgattgggtaaattgggtttgtctta 10570275  T
Q  585 gccatatttattcccttcat 604  Q
    ||||||||||||||||||||    
T  10570276 gccatatttattcccttcat 10570295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 468 - 604
Target Start/End: Original strand, 7022331 - 7022466
Alignment:
Q  468 acattatgatcttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggt 567  Q
    ||||||||  |||| ||||||||||||||||||  |||||||||||| ||||||||||||  || ||||||||||| |||| |||||||| |||||||||    
T  7022331 acattatgcccttgctcctaatggtaatatcttcgttattacatgttaggtcttatggaaagcacgaaatcataaggttttcaatggaaa-tgattgggt 7022429  T
Q  568 aaattgggtttgtcttagccatatttattcccttcat 604  Q
    |||||||||||||||||||||||||||||| ||||||    
T  7022430 aaattgggtttgtcttagccatatttattctcttcat 7022466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 1605632 - 1605579
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1605632 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 1605579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 7761354 - 7761301
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7761354 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 7761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 468 - 604
Target Start/End: Complemental strand, 26292831 - 26292705
Alignment:
Q  468 acattatgatcttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggt 567  Q
    |||||||| ||||| || |||||||||||| ||  |||||||||||||||||||||||||  || ||||||||||| |||| |||||||||             
T  26292831 acattatgctcttgctcttaatggtaatatattcgttattacatgttgggtcttatggaaagcacgaaatcataaggttttcaatggaaat--------- 26292741  T
Q  568 aaattgggtttgtcttagccatatttattcccttcat 604  Q
      |||||||||||||||||||||||||||| ||||||    
T  26292740 -gattgggtttgtcttagccatatttattctcttcat 26292705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 29260245 - 29260192
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29260245 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 29260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 8626535 - 8626481
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  8626535 cttggttaatgcaatttcttcaaaatggacatgtattttgaaacggagggagtaa 8626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 4129487 - 4129434
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  4129487 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagtaa 4129434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 15064918 - 15064971
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  15064918 cttggttgctgcaatttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 17942496 - 17942443
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17942496 cttggttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagta 17942443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 30734707 - 30734753
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 379  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  30734707 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 13757261 - 13757208
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  13757261 cttggttagtgtaatttctccaaaatggacatgtattttgaaacggagagagta 13757208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 30734836 - 30734879
Alignment:
Q  337 gttactgcaatttctccaaaatggacatgtattttgaaacggag 380  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  30734836 gttactgcaatttcttcaaaatggacatgtattttgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 19996363 - 19996322
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 8235677 - 8235624
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||  |||||||||    
T  8235677 cttggttactgcaatttcttcaaaatgtacatgtattttaaaatagagggagta 8235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 31559961 - 31559998
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtatttt 371  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31559961 ttggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 22055006 - 22055037
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaagt 389  Q
    ||||||||||||||||||||||||||||||||    
T  22055006 tggacatgtattttgaaacggagggagtaagt 22055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 15064733 - 15064695
Alignment:
Q  348 ttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064733 ttctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 17942682 - 17942720
Alignment:
Q  348 ttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  17942682 ttctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 25476042 - 25476071
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  25476042 tggacatgtattttgaaacggagggagtaa 25476071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 4147959 - 4147931
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  4147959 tggacatgtattttgaaacggagggagta 4147931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 18668716 - 18668688
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  18668716 tggacatgtattttgaaacggagggagta 18668688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 18668922 - 18668950
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  18668922 tggacatgtattttgaaacggagggagta 18668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 19087986 - 19087958
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  19087986 tggacatgtattttgaaacggagggagta 19087958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 19088192 - 19088220
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  19088192 tggacatgtattttgaaacggagggagta 19088220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 20437045 - 20437017
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  20437045 tggacatgtattttgaaacggagggagta 20437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 24623969 - 24623941
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  24623969 tggacatgtattttgaaacggagggagta 24623941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 32414913 - 32414941
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  32414913 tggacatgtattttgaaacggagggagta 32414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 32420754 - 32420782
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  32420754 tggacatgtattttgaaacggagggagta 32420782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 32671844 - 32671816
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  32671844 tggacatgtattttgaaacggagggagta 32671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 15305094 - 15305265
Alignment:
Q  212 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15305094 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggatgaaatcaaagacaagggtataataggaact 15305193  T
Q  312 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305194 tttgtgtcaaacttgcttgtc---agttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 30720716 - 30720770
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30720716 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 30720770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 12807077 - 12807130
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12807077 cttggttaatgcaatttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 16983311 - 16983258
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16983311 cttggttactgcaatttctccaaaatggacatgtattttgaaacagagggagta 16983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 25773702 - 25773649
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25773702 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 37900848 - 37900901
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  37900848 cttggttactgcaatttctccaaaatggatgtgtattttgaaacggagggagta 37900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 31485702 - 31485620
Alignment:
Q  172 gtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatga 254  Q
    ||||||||||| || ||||||||||||||||     ||||||| ||||||||||||||||||||||||| | |||||||||||    
T  31485702 gtattggtattaccggtatgtattggtattgccatttgattgactttaattaattttggtattggtattcgaagtaattatga 31485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 10285281 - 10285334
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  10285281 cttggttaatgcaatttctccaaaatagacatctattttgaaacggagggagta 10285334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 40886834 - 40886887
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  40886834 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 36561323 - 36561377
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||| |||||||||||| || |||||||||||||||||||||||||| |||||||    
T  36561323 cttgattactgcaatttttctaaaatggacatgtattttgaaacggatggagtaa 36561377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 7277647 - 7277688
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaa 375  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  7277647 ttggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 15304863 - 15304822
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 25683267 - 25683229
Alignment:
Q  348 ttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  25683267 ttctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 978311 - 978340
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  978311 tggacatgtattttgaaacggagggagtaa 978340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 33387453 - 33387482
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  33387453 tggacatgtattttgaaacggagggagtaa 33387482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 978105 - 978077
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  978105 tggacatgtattttgaaacggagggagta 978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 8086264 - 8086292
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  8086264 tggacatgtattttgaaacggagggagta 8086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 9502655 - 9502627
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  9502655 tggacatgtattttgaaacggagggagta 9502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 14634185 - 14634157
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  14634185 tggacatgtattttgaaacggagggagta 14634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 216 - 371
Target Start/End: Complemental strand, 19361817 - 19361662
Alignment:
Q  216 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttg 315  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19361817 tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg 19361718  T
Q  316 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19361717 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 20541643 - 20541492
Alignment:
Q  208 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagac----aagggtataa 303  Q
    ||||||| |||||||| ||||| |||||||||  ||||||||||||||||| |||||||||||||||||  |||||||||||||||    ||||||||||    
T  20541643 tgattgactttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataa 20541544  T
Q  304 taggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaa 355  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  20541543 taggaacttttgtgtcgaactagtttgtccttggttaatgcaatttctccaa 20541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 468 - 604
Target Start/End: Original strand, 21374635 - 21374770
Alignment:
Q  468 acattatgatcttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggt 567  Q
    ||||||||  |||| ||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||| |||||||||| || |||||||||    
T  21374635 acattatgcccttgctcctaatggtaatatctttgttattacttgttgggtcttatggaaggcacgaaatcataaggtttttaatggtaa-tgattgggt 21374733  T
Q  568 aaattgggtttgtcttagccatatttattcccttcat 604  Q
    |||||||||||||||||||||||||||||| ||||||    
T  21374734 aaattgggtttgtcttagccatatttattctcttcat 21374770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 468 - 604
Target Start/End: Complemental strand, 19816896 - 19816761
Alignment:
Q  468 acattatgatcttggtcctaatggtaatatctttattattacatgttgggtcttatggaagacatgaaatcataagatttttaatggaaattgattgggt 567  Q
    ||||||||  |||| |||||||||||||||||| ||||||| ||||||||||||||||||| || | ||||| ||| ||||||||||||| |||||||||    
T  19816896 acattatgcccttgctcctaatggtaatatcttcattattatatgttgggtcttatggaaggcacgcaatcagaaggtttttaatggaaa-tgattgggt 19816798  T
Q  568 aaattgggtttgtcttagccatatttattcccttcat 604  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19816797 aaattgggtttgtcttagccatatttattctcttcat 19816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 40122710 - 40122762
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122710 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 14261097 - 14261044
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14261097 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 14261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 21310478 - 21310425
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21310478 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 21310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 21661759 - 21661812
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21661759 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21661812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 21670523 - 21670576
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21670523 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 25704704 - 25704651
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25704704 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 34324807 - 34324860
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34324807 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 12071613 - 12071561
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12071613 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 22321491 - 22321544
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  22321491 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 24706471 - 24706524
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  24706471 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggatggagta 24706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 44568889 - 44568837
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  44568889 ttggttagtgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 20249236 - 20249290
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||| ||||||    
T  20249236 cttggttaatacaatttatccaaaatggacatgtattttgaaacggagagagtaa 20249290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 31892291 - 31892240
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggag 384  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||||||||    
T  31892291 cttggttactgcaatttctttaaaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 19362189 - 19362223
Alignment:
Q  345 aatttctccaaaatggacatgtattttgaaacgga 379  Q
    |||||||| ||||||||||||||||||||||||||    
T  19362189 aatttctctaaaatggacatgtattttgaaacgga 19362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 2760758 - 2760729
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  2760758 tggacatgtattttgaaacggagggagtaa 2760729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 2760961 - 2760990
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  2760961 tggacatgtattttgaaacggagggagtaa 2760990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 19433386 - 19433357
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  19433386 tggacatgtattttgaaacggagggagtaa 19433357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 55209602 - 55209573
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  55209602 tggacatgtattttgaaacggagggagtaa 55209573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Original strand, 55209808 - 55209837
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  55209808 tggacatgtattttgaaacggagggagtaa 55209837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 4467548 - 4467520
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  4467548 tggacatgtattttgaaacggagggagta 4467520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 26170014 - 26169986
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  26170014 tggacatgtattttgaaacggagggagta 26169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 26170221 - 26170249
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  26170221 tggacatgtattttgaaacggagggagta 26170249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 29830371 - 29830343
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  29830371 tggacatgtattttgaaacggagggagta 29830343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 35381128 - 35381156
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  35381128 tggacatgtattttgaaacggagggagta 35381156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 38416678 - 38416650
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  38416678 tggacatgtattttgaaacggagggagta 38416650  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 38416884 - 38416912
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  38416884 tggacatgtattttgaaacggagggagta 38416912  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 44232105 - 44232077
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  44232105 tggacatgtattttgaaacggagggagta 44232077  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 45292066 - 45292094
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  45292066 tggacatgtattttgaaacggagggagta 45292094  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 47386520 - 47386548
Alignment:
Q  358 tggacatgtattttgaaacggagggagta 386  Q
    |||||||||||||||||||||||||||||    
T  47386520 tggacatgtattttgaaacggagggagta 47386548  T

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Target: scaffold1770 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 222 - 169
Alignment:
Q  334 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  222 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagtaa 169  T

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Target: scaffold1431 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 123 - 176
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  123 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagagagta 176  T

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Target: scaffold0054 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 45507 - 45454
Alignment:
Q  333 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 386  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  45507 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 45454  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 100675 - 100646
Alignment:
Q  358 tggacatgtattttgaaacggagggagtaa 387  Q
    ||||||||||||||||||||||||||||||    
T  100675 tggacatgtattttgaaacggagggagtaa 100646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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