View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_high_10 (Length: 362)
Name: NF5666_high_10
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 35525752 - 35526087
Alignment:
| Q |
14 |
cttataatttgggatggatggagtacacttttagtacataaaaattaatctcacatacttatgcactagcagtgcaaatta---atcccatgaactttt- |
109 |
Q |
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|||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
35525752 |
cttataatttgggacggagggagcacacttttagtacataaaaattaatctcacatacttatgcactagcagtgtaaattattaatcccatgaacttttt |
35525851 |
T |
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| Q |
110 |
cgttaaaagaccttgaatattggtgtttccattgtgatggctttacctccccaaattttatataaccaacagatttgacaacttataatctcagattttt |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35525852 |
cgttaaaagaccttgaatattggcgtttccattgtgatggctttacctccccaaattttatataaccaacagatttgacaacttataatctcagattttt |
35525951 |
T |
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| Q |
210 |
gcaatagaaatttcctccttacatatcaaacagtttggaactaagtttatctaataaatcttacaaaccctttgataaaactcaagtctttccgcttcta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35525952 |
gcaatagaaatttcctccttacatatcaaacagtttggaactaaggttatctaataaatcttacaaaccctttgataaaactcaagtctttccgcttctg |
35526051 |
T |
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| Q |
310 |
cctccctagatcatcagggttgcaaccataagtacc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35526052 |
cctccctagatcatcagggttgcaaccataagtacc |
35526087 |
T |
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