View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_high_13 (Length: 276)
Name: NF5666_high_13
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 13866560 - 13866807
Alignment:
| Q |
10 |
ttgagtttaaatagttttaataagattatttaatccaaacaaattgtgttagaaaaatttgagcttgattctnnnnnnnnnnnttgaccaaactttactt |
109 |
Q |
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| T |
13866560 |
ttgagtttaaatagtt--aataagattatttaatccaaacaaattgtgttagaaaaatttgagcttgattcttaaaaaaaaaactgaccaaattgtactt |
13866657 |
T |
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| Q |
110 |
atctttcgtctaaactctagattagtataattcatttcgtataagaactagagggttaacatgaaaaacttattttggagaannnnnnncagtattttga |
209 |
Q |
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| T |
13866658 |
atctttcgtctaaactctagattagtataatccatttcgtataagaattagagggttaacatgaaaaacttattttggagaattttttt-agtattttga |
13866756 |
T |
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| Q |
210 |
agataattcaaaatttaaatttatttaatatagaaagttaccatttaaatt |
260 |
Q |
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| T |
13866757 |
agataattcaaaatttaaatttatttaatatagaaagttaccatttaaatt |
13866807 |
T |
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