View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_high_14 (Length: 251)
Name: NF5666_high_14
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5972006 - 5971766
Alignment:
| Q |
1 |
ttaatatattgcattttgccttctttaaaaaataattgcattcaatcactgcctaacataacattattacactatttcnnnnnnnaagaagacatatatt |
100 |
Q |
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| T |
5972006 |
ttaatatatttcattttgccttttttaaaaaataattgcattcaatcactgcctaacataacaatattacactatttctttttttaagaagacatatatt |
5971907 |
T |
|
| Q |
101 |
ccacactagttgattcgttctgttcccatacaaaaaattaaaattactcnnnnnnnnnagggaaaaaagtaaaattact-tgttgactgttatctcaacg |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
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| T |
5971906 |
ccacacgagttgattcgttctgttcccatacaaaaaaataaaattactctttttttttagggaaaaaaataaaattactctgttgactgttatctcaacg |
5971807 |
T |
|
| Q |
200 |
ccattaaactttgaatttcttgagtcaaatacttgcttcat |
240 |
Q |
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| T |
5971806 |
ccattaaactttgaattttgtgagtcaaatacttgcttcat |
5971766 |
T |
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