View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_high_8 (Length: 419)
Name: NF5666_high_8
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 48011438 - 48011180
Alignment:
| Q |
17 |
agtttcaatttcaagaaaaccatatttttaacatgaagttaaaagtgtttttctaatttgttttcaatatggttatcactttacctagataaacatagta |
116 |
Q |
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| T |
48011438 |
agtttcaatttcaagaaaaccatatttttaacatgaagttaaaagtgtttttctaatttgttttcaatatggttatcactttacctagataaacatagtg |
48011339 |
T |
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| Q |
117 |
gagtatatgcactctcgtggtcttctacatcgacgagatgtaaaggccgaaaacattttaatgggtttggaccataatgaaaacaagatatctaatgcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48011338 |
gagtatatgcactctcgtggtcttctacatcgacgtgatgtaaaggccgaaaacattttaatgggtttggaccataatgaaaacaagatatctaatacat |
48011239 |
T |
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| Q |
217 |
caaaaaatttctgcattatttcccggcacatatctgctaggagtttaaagatttgtgat |
275 |
Q |
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| T |
48011238 |
caaaaaatttctgcattatttcccggcacatatctgctaggagtttaaagatttgtgat |
48011180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 323 - 408
Target Start/End: Complemental strand, 48011132 - 48011047
Alignment:
| Q |
323 |
taatgtcacattgttaaatgtttatatttttatcagaaaacaagaaatggaaatagactgtagtaacggaaactatgtaggcctat |
408 |
Q |
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| T |
48011132 |
taatgtcacattgttaaatgtttatatttttatcagaaaacaagaaatggaaatagactgtagtaacggaaactatgtaggcctat |
48011047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 48011870 - 48011969
Alignment:
| Q |
24 |
atttcaagaaaaccatatttttaacatgaagttaaaagtgtttttctaatttgttttcaatatggttatcactttacctagataaacatagtagagtata |
123 |
Q |
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| T |
48011870 |
atttcaagaaaaccatgtttttaacttgaagttaaa-gtgtttttctgatttgcctttaatatggttgtcactttatctagataaacatagtggagtata |
48011968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 48016323 - 48016367
Alignment:
| Q |
23 |
aatttcaagaaaaccatatttttaacatgaagttaaaagtgttttt |
68 |
Q |
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| T |
48016323 |
aatttcaagaaaaccatatttttaacatgaagtt-aaagtgttttt |
48016367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 15794436 - 15794561
Alignment:
| Q |
23 |
aatttcaagaaaaccatatttttaacatgaagttaaaagtgtttttctaatttgttttcaatatggtt-atcactttacctagataaacatagtagagta |
121 |
Q |
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| T |
15794436 |
aatttcaagaaaaccatatttttaacatcaagctaaa-gcattttactgatttaccttcaatgtgatttaccactttacctagataaacagagtagagta |
15794534 |
T |
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| Q |
122 |
tatgcactctcgtggtcttctacatcg |
148 |
Q |
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| T |
15794535 |
tatgcactctcggggttttctgcatcg |
15794561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 1415684 - 1415754
Alignment:
| Q |
79 |
ttcaatatggttatcactttacctagataaacatagtagagtatatgcactctc-gtggtcttctacatcg |
148 |
Q |
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||||||||||||| || || ||||| ||||||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
1415684 |
ttcaatatggttaccaattcacctacataaacatagtggagtatatgaactctcgggggtcttctacatcg |
1415754 |
T |
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