View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_12 (Length: 337)
Name: NF5666_low_12
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 48790105 - 48790394
Alignment:
| Q |
1 |
ttgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtggtggacaatcacgg |
100 |
Q |
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| T |
48790105 |
ttgttcgaaaacacaaattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgggcatgtggtggacaatcacgg |
48790204 |
T |
|
| Q |
101 |
ttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48790205 |
ttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaa |
48790304 |
T |
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| Q |
201 |
acaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccag |
290 |
Q |
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| T |
48790305 |
acaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagggatattacaataccag |
48790394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 15825636 - 15825925
Alignment:
| Q |
1 |
ttgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtggtggacaatcacgg |
100 |
Q |
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|||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
15825636 |
ttgttcaaaaacacaaattgcattcttcaagaggcttggtgtaccatctacagagtgaatgtatgtatcaatgaaatgagagtgtggtggacagtcacga |
15825735 |
T |
|
| Q |
101 |
ttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaa |
200 |
Q |
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| T |
15825736 |
ttaggtatcaaagaaacagtagatcgaccaaatccatactctccagcatcgaaaaatgtcttaaagtaaaactcttctgttggatcttggtatggcacaa |
15825835 |
T |
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| Q |
201 |
acaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccag |
290 |
Q |
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||||||||||||| |||||||||||||||||||||||| || |||| || || || || |||||||||||||| ||||||| |||||||| |
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| T |
15825836 |
acaactcagaaatataccctttgtataatactctacgagatttgtgtttttcaaggtcgtaaatagatgcaagtgatattataataccag |
15825925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 48816406 - 48816695
Alignment:
| Q |
1 |
ttgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtggtggacaatcacgg |
100 |
Q |
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|||||| || ||||| |||||||||||||| | |||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48816406 |
ttgttcaaacacacaaattgcattcttcaataggcttggtgtaccatcagccgagtgaatgtatgtatcaatgaactgagcatgtggtggacaatcacga |
48816505 |
T |
|
| Q |
101 |
ttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaa |
200 |
Q |
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|| |||||||||||||| || || ||||||||||||||||| |||||||| || || |||||||||||||| ||||| ||||| ||||| || ||||||| |
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| T |
48816506 |
ttaggtatcaaagacaccgttgacagaccaaatccaaactctccagaatcaaagaaagtcttaaagtaaaactcttcggttgggtcttgataaggcacaa |
48816605 |
T |
|
| Q |
201 |
acaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccag |
290 |
Q |
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| | ||| |||||||| |||||||| | ||| | ||| | | || ||||||||||| |||||||||||||| ||||| || ||||||| |
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| T |
48816606 |
atagctcggaaatgtagcctttgtagagtacacggcgagacttatgtttctctagatcgtaaatagatgcaagtgatatcactataccag |
48816695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 53 - 258
Target Start/End: Complemental strand, 48834040 - 48833835
Alignment:
| Q |
53 |
gagtgaatgtatgtatcaatgaattgagcatgtggtggacaatcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcga |
152 |
Q |
| |
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|||||| |||||||||||||||| | |||| ||||||||||||| | || |||||||||||||| || || | ||||||| ||||||| |||| ||| | |
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| T |
48834040 |
gagtgagtgtatgtatcaatgaactcggcatttggtggacaatcaggattaggtatcaaagacaccgttgacaaaccaaattcaaactctccagcatcaa |
48833941 |
T |
|
| Q |
153 |
aaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctc |
252 |
Q |
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| || ||||||||||||||||| || | ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| || |||||||||| |
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| T |
48833940 |
agaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctc |
48833841 |
T |
|
| Q |
253 |
tagatc |
258 |
Q |
| |
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|||||| |
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| T |
48833840 |
tagatc |
48833835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 48807859 - 48808062
Alignment:
| Q |
17 |
attgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaat----tgagcatgtggtggacaatcacggttgggtatcaaa |
112 |
Q |
| |
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|||||||||||||| | |||||| ||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||| |
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| T |
48807859 |
attgcattcttcaataggcttggtgtaccatcagccgagtgaatgtatgtatgtatgaatgaactgagcatgtggtggacaatcacgattaggtatcaaa |
48807958 |
T |
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| Q |
113 |
gacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaaacaactcagaaa |
212 |
Q |
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||||| || || || ||||||||||||| |||||||| || || |||||||||||||||||||| ||||| ||||| || |||||||| | ||| |||| |
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| T |
48807959 |
gacaccgttgacagggcaaatccaaactctccagaatcaaagaaagtcttaaagtaaaattcttcggttgggtcttgataaggcacaaatagctcggaaa |
48808058 |
T |
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| Q |
213 |
tgta |
216 |
Q |
| |
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|||| |
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| T |
48808059 |
tgta |
48808062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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