View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_17 (Length: 243)
Name: NF5666_low_17
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_17 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 21378359 - 21378585
Alignment:
| Q |
17 |
actatattcactccaagctatcttcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
116 |
Q |
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| T |
21378359 |
actatattcactccaagctatcttcagataacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
21378458 |
T |
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| Q |
117 |
taaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgatcgtccttgttacacacagcaagatgaaatt |
216 |
Q |
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| T |
21378459 |
taaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgctcgtccttgttacacacagcaagatgaaatt |
21378558 |
T |
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| Q |
217 |
tttgatccatcaaagtctacttcttat |
243 |
Q |
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| T |
21378559 |
tttgatccatcaaagtctacttcttat |
21378585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 21404851 - 21405054
Alignment:
| Q |
40 |
tcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcctaaaaggaacttgtctcttgttt |
139 |
Q |
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| T |
21404851 |
tcagctaacctaccagctaaatctggtagccttattggatcagggaattattttgttgttttagggcttggaactcctaaaaaggatttgtcacttattt |
21404950 |
T |
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| Q |
140 |
ttgatactggtagtgatctcacttggactcagtgtcaaccttgtgatcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttc |
239 |
Q |
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| T |
21404951 |
ttgacactggtagtgatctcacttggactcaatgtcaaccttgtgttggttcttgttacaagcaacaagatgaaatttatgatccaacaaagtctacttc |
21405050 |
T |
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| Q |
240 |
ttat |
243 |
Q |
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|||| |
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| T |
21405051 |
ttat |
21405054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 16225143 - 16225086
Alignment:
| Q |
186 |
tcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttat |
243 |
Q |
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| T |
16225143 |
tcgttcttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttat |
16225086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 26171533 - 26171585
Alignment:
| Q |
186 |
tcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctactt |
238 |
Q |
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| T |
26171533 |
tcgttcttgttacacacagcaagatgaaatttttgatccatcaaagtctactt |
26171585 |
T |
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