View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_19 (Length: 233)
Name: NF5666_low_19
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47706976 - 47706895
Alignment:
| Q |
1 |
tatcatgtatagctgttaataaaagtttaaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
82 |
Q |
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| T |
47706976 |
tatcatgtatagctgttaataaaactttcaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
47706895 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 47706838 - 47706758
Alignment:
| Q |
139 |
ctaataagtaaagttgtaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttgtctggtttaagtgttg |
219 |
Q |
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| T |
47706838 |
ctaataagtaaagttctaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttctctggtttaagtgttg |
47706758 |
T |
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