View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_2 (Length: 479)
Name: NF5666_low_2
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 48623009 - 48622826
Alignment:
| Q |
18 |
tgtaattcagtttgttggagtagtttagttagttaaaaaagttgttataagatagtttgtaaatgaagtaacttgtgtaacaagtattgctatataaata |
117 |
Q |
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| T |
48623009 |
tgtaattcagtttgttggagtagtttagttagttaaaaaagttgttatgagatagtttgtaaatgaagtaacttgtgtaacaagtattgctatataaata |
48622910 |
T |
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| Q |
118 |
gcatagtctctcacatatgcacaatgttaacaaacaatcaaagatttcaaaagcaatatactactctaattttccttcatagaaa |
202 |
Q |
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| T |
48622909 |
gcatagtctctcacatatgcacaatg-tagcaaacaatcaaagatttcaaaagcaatatactactctaattttccttcatagaaa |
48622826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 254 - 467
Target Start/End: Complemental strand, 48622707 - 48622494
Alignment:
| Q |
254 |
taatcatttttccaaaaactaatccaaaataaatcgcattaagttagatcagatcgannnnnnnaaattagtcattgaaaattgaatcaaacaacatata |
353 |
Q |
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| T |
48622707 |
taatcatttttccaaaaactaatccaaaataaatcgcattaaattagatcagatcgattttcttaaattagtcattgaaaattgaaccgaacaacatata |
48622608 |
T |
|
| Q |
354 |
atattatcctcgaattaaaagattttttgctttaaaattgattcaaaccgcaccgcaaacacccttaatggagtatatgacttttgttatgaaacatgta |
453 |
Q |
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| T |
48622607 |
atattatctttgaattgaaagattttttgctttaaaattgattcaaactgcaccgcaaacacccttaatggagtatatgacttttgttatgaaacacgta |
48622508 |
T |
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| Q |
454 |
ctccctcctcccta |
467 |
Q |
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| T |
48622507 |
ctccctcctcccta |
48622494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 38653416 - 38653330
Alignment:
| Q |
44 |
agttagttaaaaaagttgttataagatagtttgtaaatgaagtaacttgtgtaacaagtattgctatataaatagcatagtctctca |
130 |
Q |
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|||||||||| |||||| |||| |||||| ||| | |||||||||||||||||||||| ||| || |||| |||||| ||||||||| |
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| T |
38653416 |
agttagttaagaaagttcttatgagatagcttgcatatgaagtaacttgtgtaacaagcattactctatagatagcacagtctctca |
38653330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38653455 - 38653422
Alignment:
| Q |
18 |
tgtaattcagtttgttggagtagtttagttagtt |
51 |
Q |
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| T |
38653455 |
tgtaattcagtttgttagagtagtttagttagtt |
38653422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 4928082 - 4928136
Alignment:
| Q |
18 |
tgtaattcagtttgttggagtagtttagttagttaaaaaagttgttataagatag |
72 |
Q |
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| T |
4928082 |
tgtaattcagtttggtagagtagtttagttagttaagaaagttgttttaagatag |
4928136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 25712911 - 25712871
Alignment:
| Q |
377 |
tttttgctttaaaattgattcaaaccgcaccgcaaacaccc |
417 |
Q |
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| T |
25712911 |
tttttgcatcaaaattgattcaaaccacaccgcaaacaccc |
25712871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 42060652 - 42060624
Alignment:
| Q |
267 |
aaaaactaatccaaaataaatcgcattaa |
295 |
Q |
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| T |
42060652 |
aaaaactaatccaaaataaatcgcattaa |
42060624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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